BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0124600 Os05g0124600|J090041O07
(130 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0124600 Conserved hypothetical protein 272 4e-74
Os01g0352000 168 8e-43
Os05g0311201 152 6e-38
Os05g0372700 146 5e-36
Os05g0326900 139 7e-34
Os09g0536600 116 3e-27
Os07g0663200 Conserved hypothetical protein 112 1e-25
Os11g0573700 RNA-directed DNA polymerase (Reverse transcrip... 108 1e-24
Os03g0849400 108 1e-24
Os12g0567900 107 3e-24
Os12g0179700 Conserved hypothetical protein 105 1e-23
Os02g0118800 Conserved hypothetical protein 102 6e-23
Os02g0639850 93 5e-20
Os02g0552500 90 4e-19
Os06g0680100 88 2e-18
Os03g0842400 Conserved hypothetical protein 69 1e-12
>Os05g0124600 Conserved hypothetical protein
Length = 130
Score = 272 bits (696), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MPFWHRPDNMYDGMSSLKLQDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLA 60
MPFWHRPDNMYDGMSSLKLQDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLA
Sbjct: 1 MPFWHRPDNMYDGMSSLKLQDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLA 60
Query: 61 DWWLATRRCFRTSYRTDFDSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWG 120
DWWLATRRCFRTSYRTDFDSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWG
Sbjct: 61 DWWLATRRCFRTSYRTDFDSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWG 120
Query: 121 VAGIFSQFRE 130
VAGIFSQFRE
Sbjct: 121 VAGIFSQFRE 130
>Os01g0352000
Length = 305
Score = 168 bits (426), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 90/111 (81%)
Query: 20 QDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFD 79
QDEDCHHL V RRWC+ASF PADEENTL+DWWLATRR FRTSYRTDFD
Sbjct: 195 QDEDCHHLFVGCDYMVAVWRIIRRWCSASFAIPADEENTLSDWWLATRRRFRTSYRTDFD 254
Query: 80 SAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIFSQFRE 130
SAFMLICWLIWKE NA++FQHVSK+ +QLAEDIK+EIA+W VAGIF QF E
Sbjct: 255 SAFMLICWLIWKELNARVFQHVSKSPEQLAEDIKQEIAIWRVAGIFFQFHE 305
>Os05g0311201
Length = 168
Score = 152 bits (384), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 90/121 (74%), Gaps = 2/121 (1%)
Query: 11 YDGMSSL-KLQDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLATRRC 69
+D + SL + DE+CHHL VA S +RWCN SF PAD + LADWWLATR
Sbjct: 49 HDDLCSLCQRDDENCHHLFVACDYTAVWR-SIKRWCNESFPIPADGDAALADWWLATRCR 107
Query: 70 FRTSYRTDFDSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIFSQFR 129
F+ SYR DFD AFMLICWLIWKERNA+IFQHV K DQLAEDIK+EIAVW VAG+FSQFR
Sbjct: 108 FQKSYRADFDCAFMLICWLIWKERNARIFQHVYKLPDQLAEDIKDEIAVWRVAGVFSQFR 167
Query: 130 E 130
E
Sbjct: 168 E 168
>Os05g0372700
Length = 166
Score = 146 bits (368), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/114 (70%), Positives = 84/114 (73%), Gaps = 3/114 (2%)
Query: 8 DNMYDGMSSLKLQ--DEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLA 65
D DG+ L L +D HHL V RRWCNASF ADEENTLADWWLA
Sbjct: 53 DGKKDGIVWLWLTRGTKDYHHLFVGCDFTAAVWRIIRRWCNASFPIAADEENTLADWWLA 112
Query: 66 TRRCFRTSYRTDFDSAFMLICWLIWKER-NAKIFQHVSKTLDQLAEDIKEEIAV 118
TRRCFR SYRTDFDSAFMLICWLIWKER NA++FQHVSKT DQLAEDIKEEIAV
Sbjct: 113 TRRCFRISYRTDFDSAFMLICWLIWKERNNARLFQHVSKTPDQLAEDIKEEIAV 166
>Os05g0326900
Length = 355
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 79/106 (74%)
Query: 20 QDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFD 79
+DEDCHHL V+ R WCNA+F PAD+ +LA+WWL RR FRTSYRTDFD
Sbjct: 218 EDEDCHHLFVSCDYTAAVWRKMRAWCNANFTIPADKNRSLAEWWLTERRRFRTSYRTDFD 277
Query: 80 SAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIF 125
SAFMLICW+IWKERNA+IFQ+VS+T + L +DI EE AVW VAG F
Sbjct: 278 SAFMLICWVIWKERNARIFQNVSRTHESLEDDITEETAVWRVAGDF 323
>Os09g0536600
Length = 581
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 71/116 (61%), Gaps = 10/116 (8%)
Query: 20 QDEDCHHLLVATSRRRCGELSE-----RRWCNASFQTPADEENTLADWWLATRRCFRTSY 74
ED HHLLV C +E R W F PA+ L+DWWL R R SY
Sbjct: 471 NSEDGHHLLV-----DCAFTTEVWRRIRGWLGVDFPLPAEMATPLSDWWLTVRSRCRLSY 525
Query: 75 RTDFDSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIFSQFRE 130
R+DFD FMLICW++WKERNA+IFQ+VS+T QL +DI+EEI VW AGIFS E
Sbjct: 526 RSDFDCLFMLICWIVWKERNARIFQNVSRTAQQLVQDIREEIEVWKAAGIFSLISE 581
>Os07g0663200 Conserved hypothetical protein
Length = 232
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 20 QDEDCHHLLVATS-RRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDF 78
+ EDCHHL V R EL R W + F P + +L DWW RRCFRT YR F
Sbjct: 121 EQEDCHHLFVTCEFSGRVWELM-RAWISVDFPIPGQIDCSLIDWWFEARRCFRTGYREIF 179
Query: 79 DSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIFSQ 127
D+ ML+CWLIWKERNA+IF+ ++ +QL EDIKEEI VW A +F +
Sbjct: 180 DAVLMLVCWLIWKERNARIFEQRLRSPEQLVEDIKEEINVWRSAAVFKE 228
>Os11g0573700 RNA-directed DNA polymerase (Reverse transcriptase) domain
containing protein
Length = 700
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 67/107 (62%)
Query: 20 QDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFD 79
+ EDC HL V + R + W +F P + E LADWW+ R FRT YR+ FD
Sbjct: 587 EAEDCLHLFVTCAFTRRVWRMMQGWIGINFLLPTENEPALADWWMKARMAFRTGYRSIFD 646
Query: 80 SAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIFS 126
S F L CWL+WKERNA++F+ ++++QL +DIKEE VW AG+F+
Sbjct: 647 SVFALTCWLLWKERNARVFEQKFRSMEQLVQDIKEEAIVWKTAGVFT 693
>Os03g0849400
Length = 645
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 65/105 (61%), Gaps = 2/105 (1%)
Query: 22 EDCHHLLVATS-RRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFDS 80
EDC HL V RR +L R W N F P L WW+ R FR+SYR++FDS
Sbjct: 539 EDCLHLFVTCDFSRRVWQLL-RAWVNVDFPLPGQAGEGLIGWWMVARCHFRSSYRSNFDS 597
Query: 81 AFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIF 125
F L CWLIWKERNA+IFQH +T++QL EDIKEE+ +W G F
Sbjct: 598 VFALTCWLIWKERNARIFQHKQQTVEQLLEDIKEEVWMWKSGGYF 642
>Os12g0567900
Length = 341
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 20 QDEDCHHLLVATS-RRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDF 78
+ EDC HL + RR +L R W N F P L WW+ R FR+SYR++F
Sbjct: 233 EQEDCLHLFITCDFSRRVWQLL-RAWVNVDFPLPGQAGEGLIGWWMVARCHFRSSYRSNF 291
Query: 79 DSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIF 125
DS F L CWLIWKERNA+IFQH +T++QL EDIKEE+ +W G F
Sbjct: 292 DSVFALTCWLIWKERNARIFQHKQQTVEQLLEDIKEEVWMWKSGGYF 338
>Os12g0179700 Conserved hypothetical protein
Length = 111
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 58/84 (69%)
Query: 42 RRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFDSAFMLICWLIWKERNAKIFQHV 101
R+W +A F P E L +WWL R CFR YRT+FDSA MLICW IWKERNA++F
Sbjct: 23 RQWISAYFPIPGSENTCLTEWWLQARTCFRKCYRTNFDSACMLICWQIWKERNARVFDQR 82
Query: 102 SKTLDQLAEDIKEEIAVWGVAGIF 125
S++ +QLAE IKEEI VW AG F
Sbjct: 83 SRSPNQLAEAIKEEILVWKEAGYF 106
>Os02g0118800 Conserved hypothetical protein
Length = 212
Score = 102 bits (255), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 68/115 (59%)
Query: 12 DGMSSLKLQDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFR 71
D S + + EDC HL V + R + W +F P + E LADWW+ R FR
Sbjct: 91 DCCSLCQSEAEDCLHLFVTCAFTRRVWRMMQGWIGINFLLPTENEPALADWWMKARMAFR 150
Query: 72 TSYRTDFDSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIFS 126
T YR+ FDS F L CWL+WKE NA++F+ ++++QL +DIKEE VW G+F+
Sbjct: 151 TGYRSIFDSVFALTCWLLWKECNARVFEQKFRSIEQLVQDIKEEAIVWKTTGVFT 205
>Os02g0639850
Length = 410
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 58/106 (54%)
Query: 20 QDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFD 79
+ EDC HL R W N F P E L +WW+ R FR YR +FD
Sbjct: 300 ESEDCAHLFSKCVYTVRVWSLLRNWINVPFPIPGRSELGLTEWWMQARLRFRHCYRDNFD 359
Query: 80 SAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIF 125
S ML+CW +WKERNA++F S+ +QLAE IKEE+ +W AG F
Sbjct: 360 SVCMLVCWTVWKERNARVFDQRSRIPEQLAEAIKEEVLLWKEAGYF 405
>Os02g0552500
Length = 433
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 60/110 (54%)
Query: 21 DEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFDS 80
DEDC HL V+ + W Q PA+ L +WWL + +TS R FD+
Sbjct: 285 DEDCEHLFVSCPYTTRVWRMIKGWAGIGIQLPAEAGLELGEWWLLAWQGVQTSCRGAFDT 344
Query: 81 AFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIFSQFRE 130
+L+CW++WKERNA++FQ S+T L IKEE+ VW AG+F E
Sbjct: 345 LVLLVCWMVWKERNARVFQSQSRTAGSLFALIKEEVVVWKEAGVFKVLGE 394
>Os06g0680100
Length = 273
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 12 DGMSSLKLQDEDCHHLLVAT--SRRRCGELSERRWCNASFQTPADEENTLADWWLATRRC 69
DG E C HLL+ S R G + R W SF P ++ ADWW+ R C
Sbjct: 156 DGCVLCNGDQESCDHLLLQCPFSNRVWGLV--RTWIGTSFPLPGEDNWEFADWWMKARSC 213
Query: 70 FRTSYRTDFDSAFMLICWLIWKERNAKIFQHVSKTLDQLAEDIKEEIAVWGVAGIFSQ 127
F+T R FDS +LICW +W+ERN +IF+ ++T +L DIK+E+ VW A I +
Sbjct: 214 FQTRSRGAFDSLCLLICWFVWRERNFRIFEQKTRTALELFRDIKDEVVVWREANILRE 271
>Os03g0842400 Conserved hypothetical protein
Length = 116
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%)
Query: 20 QDEDCHHLLVATSRRRCGELSERRWCNASFQTPADEENTLADWWLATRRCFRTSYRTDFD 79
++E C HL + R +RW F P + +L +WW+A R F T YR FD
Sbjct: 34 EEESCLHLFLTCDLSRRVWTLMQRWIGIGFAPPTINDTSLTEWWMAARLNFWTGYRDIFD 93
Query: 80 SAFMLICWLIWKERNAKIFQH 100
F L CW +WKERNA++F+
Sbjct: 94 GVFALTCWFLWKERNARVFEQ 114
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.135 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,571,226
Number of extensions: 166729
Number of successful extensions: 612
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 16
Length of query: 130
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 41
Effective length of database: 12,388,755
Effective search space: 507938955
Effective search space used: 507938955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)