Os07g0663200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0663200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 206.31 | 0.675 | 5.17 | 1.01 | 0.863 | -0.962 | 0.912 | 5.95 | -0.18 | 14.6 | 24.62 | 2665 | -- | -- |
| 213.32 | 0.68 | 5.3 | 0.0342 | 0.856 | -0.959 | 0.775 | -- | -0.266 | 14.5 | 13 | 22964 | -- | -- |
| 208.51 | 0.673 | 5.18 | 1 | 0.878 | -0.995 | -- | 5.95 | -0.196 | 15 | 24.9 | 2627 | -- | -- |
| 214.49 | 0.682 | 5.31 | -0.0221 | 0.921 | -0.884 | -- | -- | -0.302 | 14.8 | 11.4 | 23087 | -- | -- |
| 250.99 | 0.738 | 5.18 | 0.959 | -- | -1.14 | -- | 5.47 | -0.176 | -- | 24.2 | 2608 | -- | -- |
| 224.42 | 0.702 | 5.39 | -0.796 | 0.931 | -- | 0.763 | -- | -0.632 | 14.4 | -- | -- | -- | -- |
| 226.19 | 0.704 | 5.39 | -0.775 | 0.943 | -- | -- | -- | -0.627 | 14.8 | -- | -- | -- | -- |
| 262.69 | 0.755 | 5.31 | 0.051 | -- | -0.982 | -- | -- | -0.281 | -- | 8.901 | 24129 | -- | -- |
| 214.49 | 0.682 | 5.31 | -- | 0.915 | -0.9 | -- | -- | -0.296 | 14.8 | 11.16 | 23062 | -- | -- |
| 277.82 | 0.779 | 5.39 | -0.815 | -- | -- | -- | -- | -0.651 | -- | -- | -- | -- | -- |
| 242.03 | 0.728 | 5.37 | -- | 0.958 | -- | -- | -- | -0.541 | 14.8 | -- | -- | -- | -- |
| 262.55 | 0.755 | 5.31 | -- | -- | -0.986 | -- | -- | -0.287 | -- | 6.219 | 22777 | -- | -- |
| 295.36 | 0.802 | 5.37 | -- | -- | -- | -- | -- | -0.561 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 2 | 191.13 | temperature | 25 | 270 | < th | dose independent | rect. | 19 | 6 |
| 5 | 191.43 | temperature | 10 | 10 | > th | dose dependent | sin | 10 | NA |
| 7 | 191.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 12 | 192.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 19 | 192.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 23 | 192.68 | temperature | 30 | 10 | < th | dose dependent | sin | 11 | NA |
| 55 | 193.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 3 |
| 61 | 193.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 9 |
| 137 | 195.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 167 | 196.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 216 | 196.84 | wind | 1 | 10 | > th | dose independent | rect. | 23 | 5 |
| 263 | 197.52 | temperature | 20 | 10 | > th | dose independent | sin | 8 | NA |
| 311 | 198.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 10 |
| 321 | 198.23 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 10 |
| 325 | 198.24 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 335 | 198.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 346 | 198.40 | wind | 1 | 10 | > th | dose independent | rect. | 21 | 7 |
| 386 | 198.74 | wind | 3 | 30 | < th | dose dependent | rect. | 24 | 9 |
| 404 | 198.88 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 9 |
| 423 | 198.99 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 15 |
| 424 | 199.02 | temperature | 25 | 270 | < th | dose independent | sin | 14 | NA |
| 440 | 199.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 483 | 199.41 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 1 |
| 484 | 199.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 490 | 199.46 | wind | 1 | 10 | > th | dose independent | rect. | 9 | 19 |
| 535 | 199.69 | wind | 3 | 90 | < th | dose dependent | rect. | 1 | 21 |
| 552 | 199.77 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 14 |
| 590 | 200.01 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 6 |
| 594 | 200.02 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 607 | 200.09 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 616 | 200.13 | wind | 1 | 10 | > th | dose independent | rect. | 12 | 16 |
| 668 | 200.38 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 8 |
| 694 | 200.49 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 742 | 200.73 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 3 |
| 759 | 200.79 | temperature | 10 | 10 | > th | dose dependent | rect. | 2 | 10 |
| 811 | 201.01 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 16 |
| 920 | 201.40 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 949 | 201.51 | wind | 3 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 968 | 201.60 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 1 |