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Os12g0511900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.16 (0.0354) R2 : 0.471
β1 : 2.21 (0.138) R2dD : 0.363 R2D : 0.208
β2 : 0.992 (0.0878) R2dC : 0.149 R2C : 0.155
β3 : -1.29 (0.157) R2dE : 0.0991 R2E : -0.0572
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.381 (0.0799) R2dN8 : 0.0411 R2N8 : -0.0379
σ : 0.65
deviance : 194.91
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C
peak time of C : 3.65
E
wheather : temperature
threshold : 2.058
memory length : 1938
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
178.1 0.627 6.09 2.81 1.14 -1.43 1.36 2.86 0.543 3.34 3.816 1091 -- --
186.81 0.637 6.16 2.28 1.08 -1.16 1.68 -- 0.397 3.44 7.695 2421 -- --
183.21 0.63 6.08 2.83 1.15 -1.32 -- 3.03 0.552 3.46 16.2 1071 -- --
194.91 0.65 6.16 2.21 0.992 -1.29 -- -- 0.381 3.65 2.058 1938 -- --
216.11 0.685 6.12 2.31 -- -1.81 -- 1.16 0.49 -- 16.76 251 -- --
215.26 0.688 6.21 1.81 1.01 -- 1.64 -- 0.148 3.74 -- -- -- --
222.99 0.699 6.22 1.78 1.03 -- -- -- 0.139 4.02 -- -- -- --
216.13 0.685 6.16 2.24 -- -2.03 -- -- 0.44 -- 15 205 -- --
302.84 0.811 6.25 -- 0.948 -0.443 -- -- 0.00757 3.59 20 529 -- --
280.44 0.783 6.22 1.82 -- -- -- -- 0.166 -- -- -- -- --
306.74 0.819 6.26 -- 1.06 -- -- -- -0.0597 4 -- -- -- --
336.6 0.854 6.23 -- -- -1.14 -- -- 0.117 -- 19.9 156 -- --
368.25 0.896 6.27 -- -- -- -- -- -0.0363 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.06 wind 7.0 43200 > th dose dependent rect. 15 18
6 169.77 wind 9.0 43200 > th dose independent sin 12 NA
9 170.21 atmosphere 1000.0 43200 < th dose dependent rect. 11 5
10 170.22 wind 9.0 43200 < th dose independent sin 12 NA
12 170.32 wind 9.0 43200 < th dose independent rect. 14 20
18 170.47 wind 9.0 43200 > th dose independent rect. 14 20
19 170.47 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
24 170.61 wind 9.0 43200 > th dose dependent sin 13 NA
35 170.80 temperature 30.0 43200 > th dose independent rect. 9 1
38 170.84 temperature 30.0 43200 < th dose independent rect. 9 1
39 170.85 temperature 30.0 43200 > th dose independent rect. 18 17
44 170.91 temperature 30.0 43200 < th dose independent rect. 18 17
61 170.97 temperature 30.0 43200 < th dose independent rect. 24 11
63 170.97 temperature 30.0 43200 < th dose independent rect. 21 14
64 170.97 wind 9.0 43200 < th dose independent rect. 15 18
67 170.98 temperature 30.0 43200 < th dose independent rect. 5 6
79 171.00 temperature 30.0 43200 > th dose dependent rect. 17 19
81 171.02 wind 9.0 43200 > th dose independent rect. 15 18
85 171.03 temperature 30.0 43200 > th dose dependent rect. 10 1
92 171.08 temperature 30.0 43200 > th dose dependent rect. 18 17
156 171.15 temperature 30.0 43200 > th dose dependent sin 10 NA
188 171.29 radiation 1.0 43200 > th dose independent rect. 4 2
223 171.39 radiation 1.0 43200 < th dose independent rect. 24 6
225 171.39 radiation 1.0 43200 < th dose independent rect. 21 9
231 171.41 radiation 1.0 43200 < th dose independent rect. 4 2
237 171.42 temperature 30.0 43200 > th dose independent sin 9 NA
245 171.47 wind 9.0 43200 > th dose independent rect. 17 15
250 171.50 temperature 30.0 43200 < th dose independent sin 9 NA
264 171.58 temperature 25.0 43200 > th dose dependent rect. 6 1
287 171.63 wind 9.0 43200 < th dose independent rect. 17 15
315 171.70 temperature 30.0 43200 > th dose dependent rect. 15 4
350 171.77 temperature 30.0 43200 > th dose dependent no NA NA
351 171.77 temperature 30.0 43200 > th dose dependent rect. 8 11
517 171.83 temperature 30.0 43200 > th dose dependent sin 23 NA
676 172.01 temperature 25.0 43200 > th dose dependent rect. 22 2
739 172.07 temperature 25.0 43200 < th dose independent rect. 2 1
744 172.10 temperature 30.0 43200 < th dose independent rect. 17 2
748 172.11 temperature 30.0 43200 > th dose independent rect. 17 2
753 172.11 temperature 30.0 43200 < th dose independent rect. 17 5
759 172.11 temperature 30.0 43200 < th dose independent rect. 17 10
790 172.18 wind 9.0 43200 > th dose dependent sin 18 NA
832 172.27 temperature 25.0 43200 > th dose dependent rect. 2 2
841 172.31 precipitation 0.1 43200 > th dose dependent rect. 22 9
846 172.36 temperature 25.0 43200 < th dose independent rect. 1 6
874 172.46 wind 5.0 43200 > th dose dependent rect. 17 10
879 172.49 temperature 25.0 43200 > th dose independent rect. 5 2
913 172.59 temperature 25.0 43200 < th dose independent rect. 5 2
917 172.60 temperature 25.0 43200 > th dose independent rect. 2 5
934 172.67 precipitation 0.1 43200 < th dose independent rect. 22 9
937 172.67 precipitation 0.1 43200 < th dose dependent rect. 22 9
947 172.69 precipitation 0.1 43200 > th dose independent rect. 22 9
974 172.74 temperature 25.0 43200 > th dose independent rect. 2 2
985 172.74 wind 9.0 43200 > th dose independent rect. 17 12
999 172.76 wind 9.0 43200 > th dose independent rect. 17 10