BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0175500 Os12g0175500|AK060940
(285 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0175500 Similar to Glutaredoxin-like protein 515 e-146
Os10g0500700 Glutaredoxin-related protein family protein 105 5e-23
Os03g0851200 Similar to CAXIP1 protein 102 4e-22
Os01g0530400 Glutaredoxin-related protein family protein 88 6e-18
Os01g0174900 Glutaredoxin-related protein family protein 83 2e-16
>Os12g0175500 Similar to Glutaredoxin-like protein
Length = 285
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/264 (96%), Positives = 254/264 (96%)
Query: 22 RPSSSSTLXXXXXXXXXXGGLAVSAFTKLSEASPVAIPPEPAQPLPDEEALPPKPGVYGV 81
RPSSSSTL GGLAVSAFTKLSEASPVAIPPEPAQPLPDEEALPPKPGVYGV
Sbjct: 22 RPSSSSTLRFPPRRPARRGGLAVSAFTKLSEASPVAIPPEPAQPLPDEEALPPKPGVYGV 81
Query: 82 YDPAGELQFVGISRNVRASVEGHRRKVPADLCGSVKVSIADEETPDRTVLTNAWKSWLEE 141
YDPAGELQFVGISRNVRASVEGHRRKVPADLCGSVKVSIADEETPDRTVLTNAWKSWLEE
Sbjct: 82 YDPAGELQFVGISRNVRASVEGHRRKVPADLCGSVKVSIADEETPDRTVLTNAWKSWLEE 141
Query: 142 HITATGKAPPGNVAGNHTWVGPPQRPPDLRLTPGRHVQLTVPLEQLIDRLVKDNKVVAFI 201
HITATGKAPPGNVAGNHTWVGPPQRPPDLRLTPGRHVQLTVPLEQLIDRLVKDNKVVAFI
Sbjct: 142 HITATGKAPPGNVAGNHTWVGPPQRPPDLRLTPGRHVQLTVPLEQLIDRLVKDNKVVAFI 201
Query: 202 KGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRETLKTYSNWPTFPQVFVGG 261
KGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRETLKTYSNWPTFPQVFVGG
Sbjct: 202 KGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRETLKTYSNWPTFPQVFVGG 261
Query: 262 ELVGGCDIVSSMAEKGELAALFKK 285
ELVGGCDIVSSMAEKGELAALFKK
Sbjct: 262 ELVGGCDIVSSMAEKGELAALFKK 285
>Os10g0500700 Glutaredoxin-related protein family protein
Length = 384
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 73/102 (71%), Gaps = 3/102 (2%)
Query: 184 LEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRE 243
L + +++LV + V F+KG+ P+CGFS++VV +L+ GV+F + D+L ++ +RE
Sbjct: 150 LNKRLEQLVNSHPVFLFMKGTPEQPRCGFSRKVVDVLKQEGVEFGSFDILT---DNDVRE 206
Query: 244 TLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGELAALFKK 285
+K +SNWPTFPQ++ GEL+GGCDIV +M E GEL +FK+
Sbjct: 207 GMKKFSNWPTFPQLYCKGELLGGCDIVIAMHESGELKDVFKE 248
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 68/100 (68%), Gaps = 3/100 (3%)
Query: 180 LTVPLEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNH 239
LT ++ ++ LV + V+AFIKG+ P+CGFS ++V IL+ + F + D+L ++
Sbjct: 282 LTAAQKERLESLVNFSTVMAFIKGTPEEPKCGFSGKLVHILKQEKIPFSSFDILTDDE-- 339
Query: 240 GLRETLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGEL 279
+R+ LK SNWP++PQ+++ GEL+GGCDIV + + GEL
Sbjct: 340 -VRQGLKLLSNWPSYPQLYINGELIGGCDIVLELEKSGEL 378
>Os03g0851200 Similar to CAXIP1 protein
Length = 168
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 65/102 (63%), Gaps = 3/102 (2%)
Query: 184 LEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRE 243
+ +D++V +KVV F+KG++ PQCGFS VV IL S V F T+DVL N LR+
Sbjct: 66 MRATLDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVL---ANEALRQ 122
Query: 244 TLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGELAALFKK 285
LK YS+WPTFPQ+++ GE GGCDI + GEL +K
Sbjct: 123 GLKEYSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETLEK 164
>Os01g0530400 Glutaredoxin-related protein family protein
Length = 185
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 12/145 (8%)
Query: 135 WKSWLEEHITATGKAPPGNVAGNHTWVGPPQRPPDLRLTPGRHVQLTVPLEQLIDRLVKD 194
+ S L TATG + VA + P D + T + + ++ + +K+
Sbjct: 36 YSSGLGGDSTATGDSSSTRVAAD------PDTHQDFQPTTKSS---NMSFDDIVSQDIKE 86
Query: 195 NKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRETLKTYSNWPTF 254
N V+ ++KG AP+CGFS V +L+ + V D+L + L+E++K ++NWPTF
Sbjct: 87 NPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPISARDILGDLK---LKESVKAHTNWPTF 143
Query: 255 PQVFVGGELVGGCDIVSSMAEKGEL 279
PQ+F+ GE VGG DI+ M +KG+L
Sbjct: 144 PQIFIKGEFVGGSDIILDMHQKGQL 168
>Os01g0174900 Glutaredoxin-related protein family protein
Length = 185
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 181 TVPLEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHG 240
+ + ++ + +K+N V+ ++KG +P CGFS V +L+ + V D+L +
Sbjct: 73 NMSFDDIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGDLK--- 129
Query: 241 LRETLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGEL 279
L+E +K ++NWPTFPQ+F+ GE VGG DI+ M +KG+L
Sbjct: 130 LKECVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQL 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,517,113
Number of extensions: 500042
Number of successful extensions: 2032
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2027
Number of HSP's successfully gapped: 6
Length of query: 285
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 185
Effective length of database: 11,814,401
Effective search space: 2185664185
Effective search space used: 2185664185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)