Os03g0851200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CAXIP1 protein.
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Os03g0851200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CAXIP1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.2 | 0.323 | 10.2 | 0.0852 | 1.9 | -0.954 | 0.893 | 7.25 | -0.514 | 8.22 | 26.16 | 4015 | -- | -- |
| 52.83 | 0.341 | 10.3 | -1.41 | 1.94 | -0.601 | 0.705 | -- | -0.702 | 8.7 | 20.43 | 8153 | -- | -- |
| 49.21 | 0.327 | 10.1 | 0.296 | 1.86 | -1.19 | -- | 9.03 | -0.566 | 8.23 | 27.52 | 3897 | -- | -- |
| 53.07 | 0.342 | 10.3 | -1.35 | 1.95 | -0.86 | -- | -- | -0.683 | 8.75 | 0.6906 | 42965 | -- | -- |
| 222.18 | 0.694 | 10.1 | 0.965 | -- | -1.84 | -- | 9.86 | -0.23 | -- | 25.97 | 2128 | -- | -- |
| 58.27 | 0.358 | 10.3 | -1.54 | 1.94 | -- | 0.784 | -- | -0.803 | 8.25 | -- | -- | -- | -- |
| 60.17 | 0.363 | 10.3 | -1.51 | 1.94 | -- | -- | -- | -0.803 | 8.27 | -- | -- | -- | -- |
| 261.68 | 0.753 | 10.3 | -0.989 | -- | -0.617 | -- | -- | -0.554 | -- | 5.062 | 22341 | -- | -- |
| 67.12 | 0.382 | 10.2 | -- | 1.93 | -1.18 | -- | -- | -0.283 | 8.22 | 5.797 | 47520 | -- | -- |
| 267.39 | 0.764 | 10.4 | -1.5 | -- | -- | -- | -- | -0.782 | -- | -- | -- | -- | -- |
| 120.6 | 0.514 | 10.3 | -- | 1.93 | -- | -- | -- | -0.635 | 8.32 | -- | -- | -- | -- |
| 272.09 | 0.768 | 10.3 | -- | -- | -1.19 | -- | -- | -0.259 | -- | 1.893 | 47520 | -- | -- |
| 326.8 | 0.844 | 10.4 | -- | -- | -- | -- | -- | -0.615 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.28 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 2 | 44.11 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 3 | 44.13 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 4 | 44.16 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 5 | 44.17 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 14 |
| 7 | 44.19 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |
| 10 | 44.20 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 13 | 44.25 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 33 | 44.41 | radiation | 40 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 44 | 44.52 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 49 | 44.56 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 64 | 44.68 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 74 | 44.77 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 114 | 44.83 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 120 | 44.88 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 125 | 44.89 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 127 | 44.90 | radiation | 40 | 43200 | > th | dose independent | sin | 17 | NA |
| 145 | 44.90 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 21 |
| 147 | 44.90 | radiation | 20 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 151 | 44.91 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 169 | 44.97 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 170 | 44.97 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 214 | 45.02 | radiation | 20 | 43200 | > th | dose independent | sin | 11 | NA |
| 217 | 45.02 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 250 | 45.06 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 252 | 45.06 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 259 | 45.07 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 334 | 45.13 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 500 | 45.15 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 520 | 45.19 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 565 | 45.23 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 570 | 45.25 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 673 | 45.30 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 697 | 45.32 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 991 | 45.37 | radiation | 40 | 43200 | < th | dose dependent | rect. | 9 | 6 |