BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0851200 Os03g0851200|AK059425
(168 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0851200 Similar to CAXIP1 protein 298 1e-81
Os10g0500700 Glutaredoxin-related protein family protein 111 3e-25
Os12g0175500 Similar to Glutaredoxin-like protein 103 8e-23
Os01g0530400 Glutaredoxin-related protein family protein 95 3e-20
Os01g0174900 Glutaredoxin-related protein family protein 91 5e-19
>Os03g0851200 Similar to CAXIP1 protein
Length = 168
Score = 298 bits (763), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/157 (93%), Positives = 147/157 (93%)
Query: 12 ISPLPGASLPRPVSARVPLLPRASPPTWRLSVGSARARSTRCXXXXXXXXXXPEMRATLD 71
ISPLPGASLPRPVSARVPLLPRASPPTWRLSVGSARARSTRC PEMRATLD
Sbjct: 12 ISPLPGASLPRPVSARVPLLPRASPPTWRLSVGSARARSTRCLAAAGGGGLAPEMRATLD 71
Query: 72 KVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSSWP 131
KVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSSWP
Sbjct: 72 KVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSSWP 131
Query: 132 TFPQLYIDGEFFGGCDITVDAYKSGELQETLEKAMLS 168
TFPQLYIDGEFFGGCDITVDAYKSGELQETLEKAMLS
Sbjct: 132 TFPQLYIDGEFFGGCDITVDAYKSGELQETLEKAMLS 168
>Os10g0500700 Glutaredoxin-related protein family protein
Length = 384
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 70/99 (70%)
Query: 66 MRATLDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLK 125
+ L+++V SH V LFMKGT + P+CGFS VV +L+ V F + D+L + +R+G+K
Sbjct: 150 LNKRLEQLVNSHPVFLFMKGTPEQPRCGFSRKVVDVLKQEGVEFGSFDILTDNDVREGMK 209
Query: 126 EYSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETLEK 164
++S+WPTFPQLY GE GGCDI + ++SGEL++ ++
Sbjct: 210 KFSNWPTFPQLYCKGELLGGCDIVIAMHESGELKDVFKE 248
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 68/96 (70%)
Query: 67 RATLDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKE 126
+ L+ +V V+ F+KGT + P+CGFS +V IL+ +PF + D+L ++ +RQGLK
Sbjct: 287 KERLESLVNFSTVMAFIKGTPEEPKCGFSGKLVHILKQEKIPFSSFDILTDDEVRQGLKL 346
Query: 127 YSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETL 162
S+WP++PQLYI+GE GGCDI ++ KSGEL+ TL
Sbjct: 347 LSNWPSYPQLYINGELIGGCDIVLELEKSGELKSTL 382
>Os12g0175500 Similar to Glutaredoxin-like protein
Length = 285
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 3/98 (3%)
Query: 70 LDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVL---ANEALRQGLKE 126
+D++V +KVV F+KG++ PQCGFS VV IL S V F T+DVL N LR+ LK
Sbjct: 188 IDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRETLKT 247
Query: 127 YSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETLEK 164
YS+WPTFPQ+++ GE GGCDI + GEL +K
Sbjct: 248 YSNWPTFPQVFVGGELVGGCDIVSSMAEKGELAALFKK 285
>Os01g0530400 Glutaredoxin-related protein family protein
Length = 185
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 60/84 (71%)
Query: 79 VVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSSWPTFPQLYI 138
V+++MKG D P+CGFS V++L+ DVP D+L + L++ +K +++WPTFPQ++I
Sbjct: 89 VLIYMKGYPDAPRCGFSALAVRVLKQYDVPISARDILGDLKLKESVKAHTNWPTFPQIFI 148
Query: 139 DGEFFGGCDITVDAYKSGELQETL 162
GEF GG DI +D ++ G+L++ L
Sbjct: 149 KGEFVGGSDIILDMHQKGQLKDVL 172
>Os01g0174900 Glutaredoxin-related protein family protein
Length = 185
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 61/89 (68%)
Query: 74 VGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSSWPTF 133
+ + V+++MKG + P CGFS V++L+ DVP D+L + L++ +K +++WPTF
Sbjct: 84 IKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGDLKLKECVKAHTNWPTF 143
Query: 134 PQLYIDGEFFGGCDITVDAYKSGELQETL 162
PQ++I GEF GG DI +D ++ G+L++ L
Sbjct: 144 PQIFIKGEFVGGSDIILDMHQKGQLKDVL 172
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,104,710
Number of extensions: 190461
Number of successful extensions: 858
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 6
Length of query: 168
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 75
Effective length of database: 12,179,899
Effective search space: 913492425
Effective search space used: 913492425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)