Os01g0174900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutaredoxin-related protein family protein.
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Os01g0174900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutaredoxin-related protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.37 | 0.283 | 11.5 | -0.199 | 0.395 | -0.333 | 0.0261 | -0.554 | 0.214 | 21.6 | 68.98 | 1261 | -- | -- |
| 36.86 | 0.283 | 11.5 | -0.143 | 0.401 | -0.371 | -0.0481 | -- | 0.212 | 21.6 | 67.32 | 1253 | -- | -- |
| 36.36 | 0.281 | 11.5 | -0.199 | 0.398 | -0.334 | -- | -0.555 | 0.213 | 21.6 | 68.96 | 1250 | -- | -- |
| 36.86 | 0.283 | 11.5 | -0.141 | 0.4 | -0.374 | -- | -- | 0.211 | 21.6 | 67.26 | 1253 | -- | -- |
| 44.66 | 0.311 | 11.5 | -0.197 | -- | -0.288 | -- | -0.471 | 0.212 | -- | 68.12 | 1395 | -- | -- |
| 42.01 | 0.304 | 11.5 | -0.213 | 0.355 | -- | -0.0372 | -- | 0.227 | 21 | -- | -- | -- | -- |
| 42.02 | 0.304 | 11.5 | -0.212 | 0.356 | -- | -- | -- | 0.227 | 20.9 | -- | -- | -- | -- |
| 45.16 | 0.313 | 11.5 | -0.132 | -- | -0.324 | -- | -- | 0.228 | -- | 68.85 | 1408 | -- | -- |
| 37.37 | 0.285 | 11.5 | -- | 0.405 | -0.395 | -- | -- | 0.225 | 21.6 | 67.56 | 1250 | -- | -- |
| 49.24 | 0.328 | 11.5 | -0.212 | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
| 43.2 | 0.307 | 11.5 | -- | 0.356 | -- | -- | -- | 0.251 | 20.9 | -- | -- | -- | -- |
| 45.65 | 0.315 | 11.5 | -- | -- | -0.335 | -- | -- | 0.241 | -- | 68.62 | 1408 | -- | -- |
| 50.43 | 0.331 | 11.5 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.73 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 2 | 33.76 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 3 | 33.94 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 6 | 34.06 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 9 | 34.17 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 12 | 34.29 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 14 | 34.30 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 15 | 34.31 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 19 | 34.34 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 22 | 34.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 23 | 34.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 46 | 34.53 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 51 | 34.57 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 65 | 34.68 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 80 | 34.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 81 | 34.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 98 | 34.79 | humidity | 90 | 14400 | > th | dose dependent | sin | 23 | NA |
| 99 | 34.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 106 | 34.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 16 |
| 122 | 34.88 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 144 | 34.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 148 | 34.94 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 150 | 34.95 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 157 | 34.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 20 |
| 162 | 34.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 164 | 34.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 167 | 35.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 186 | 35.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 190 | 35.03 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 221 | 35.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 224 | 35.08 | humidity | 90 | 14400 | > th | dose independent | sin | 23 | NA |
| 238 | 35.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 241 | 35.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 249 | 35.11 | wind | 7 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 251 | 35.12 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 258 | 35.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 268 | 35.14 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 269 | 35.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 21 |
| 271 | 35.14 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 293 | 35.15 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 304 | 35.15 | wind | 7 | 14400 | > th | dose dependent | rect. | 2 | 11 |
| 330 | 35.18 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 336 | 35.18 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 365 | 35.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 410 | 35.24 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 433 | 35.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 436 | 35.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 453 | 35.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 466 | 35.28 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 487 | 35.29 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 12 |
| 490 | 35.29 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 537 | 35.32 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 538 | 35.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 597 | 35.36 | humidity | 90 | 14400 | < th | dose independent | sin | 23 | NA |
| 621 | 35.37 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 666 | 35.39 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 693 | 35.40 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 699 | 35.41 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 725 | 35.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 767 | 35.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 777 | 35.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 836 | 35.48 | humidity | 70 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 848 | 35.49 | wind | 3 | 43200 | < th | dose independent | sin | 8 | NA |
| 871 | 35.50 | wind | 3 | 43200 | > th | dose independent | sin | 8 | NA |
| 872 | 35.50 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 967 | 35.55 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 1 |