BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0174900 Os01g0174900|AK060966
(185 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15660.1 | chr3:5308134-5309383 REVERSE LENGTH=170 171 1e-43
AT4G04950.1 | chr4:2517882-2519924 REVERSE LENGTH=489 102 1e-22
AT2G38270.1 | chr2:16031347-16033054 REVERSE LENGTH=294 91 4e-19
AT3G54900.1 | chr3:20341850-20342371 REVERSE LENGTH=174 90 6e-19
>AT3G15660.1 | chr3:5308134-5309383 REVERSE LENGTH=170
Length = 169
Score = 171 bits (434), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 123/184 (66%), Gaps = 27/184 (14%)
Query: 1 MARLVSTALMRGL-----VRSSRAPRVAAVSQPAIQQFRNYSPXXXXXXXXXXXXXXTRV 55
MA +S+ L++G+ VRSSR A+V Q + +F + P
Sbjct: 1 MAASLSSRLIKGIANLKAVRSSRLTS-ASVYQNGMMRFSSTVP----------------- 42
Query: 56 AADPDTHQDFQPTSK---SSNMSFDDIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVL 112
+D DTH DF+PT K S S DIV D+K+NPV+IYMKG PESP CGFS+LAV+VL
Sbjct: 43 -SDSDTHDDFKPTQKVPPDSTDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVL 101
Query: 113 KLYDVPISARDILGDLKLKECVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVL 172
+ Y+VPIS+R+IL D +LK VK+ ++WPTFPQIFIKGEF+GGSDIIL+MH++G+L+ L
Sbjct: 102 QQYNVPISSRNILEDQELKNAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKL 161
Query: 173 GDIA 176
D++
Sbjct: 162 KDVS 165
>AT4G04950.1 | chr4:2517882-2519924 REVERSE LENGTH=489
Length = 488
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 62/90 (68%)
Query: 87 NPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGDLKLKECVKAHTNWPTFPQI 146
+PV+++MKG PE P CGFS V +LK +V + DIL D +++E +K +NWPTFPQ+
Sbjct: 164 HPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDFGSFDILSDNEVREGLKKFSNWPTFPQL 223
Query: 147 FIKGEFVGGSDIILDMHQKGQLKDVLGDIA 176
+ GE +GG+DI + MH+ G+LKD D+
Sbjct: 224 YCNGELLGGADIAIAMHESGELKDAFKDLG 253
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 66/98 (67%)
Query: 84 IKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGDLKLKECVKAHTNWPTF 143
+ PV+++MKG PE P CGFS V++L + + DIL D ++++ +K ++NW ++
Sbjct: 291 VNSKPVMLFMKGRPEEPKCGFSGKVVEILNQEKIEFGSFDILLDDEVRQGLKVYSNWSSY 350
Query: 144 PQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKHEQ 181
PQ+++KGE +GGSDI+L+M + G+LK VL + EQ
Sbjct: 351 PQLYVKGELMGGSDIVLEMQKSGELKKVLTEKGITGEQ 388
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%)
Query: 71 SSNMSFDDIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGDLKL 130
+ S +D + I + V+++MKG P+ P CGFS+ VK L+ +V + DIL D ++
Sbjct: 385 TGEQSLEDRLKALINSSEVMLFMKGSPDEPKCGFSSKVVKALRGENVSFGSFDILTDEEV 444
Query: 131 KECVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGD 174
++ +K +NWPTFPQ++ KGE +GG DII+++ + G LK L +
Sbjct: 445 RQGIKNFSNWPTFPQLYYKGELIGGCDIIMELSESGDLKATLSE 488
>AT2G38270.1 | chr2:16031347-16033054 REVERSE LENGTH=294
Length = 293
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Query: 76 FDDIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGD---LKLKE 132
++++ + +KE+ V+ ++KG +P CGFS V +L+ V D+L D L+E
Sbjct: 193 LEELIDRLVKESKVVAFIKGSRSAPQCGFSQRVVGILESQGVDYETVDVLDDEYNHGLRE 252
Query: 133 CVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVL 172
+K ++NWPTFPQIF+KGE VGG DI+ M++ G+L ++L
Sbjct: 253 TLKNYSNWPTFPQIFVKGELVGGCDILTSMYENGELANIL 292
>AT3G54900.1 | chr3:20341850-20342371 REVERSE LENGTH=174
Length = 173
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 62/93 (66%)
Query: 78 DIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPISARDILGDLKLKECVKAH 137
D + + + V+++MKG + PMCGFS V++LK +VP +IL + L++ +K +
Sbjct: 73 DTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 132
Query: 138 TNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKD 170
+NWPTFPQ++I GEF GG DI L+ + G+L++
Sbjct: 133 SNWPTFPQLYIGGEFFGGCDITLEAFKTGELQE 165
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,446,552
Number of extensions: 126954
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 6
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)