Os01g0530400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutaredoxin-related protein family protein.
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Os01g0530400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutaredoxin-related protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.48 | 0.272 | 9.58 | 0.326 | 0.709 | 0.337 | -0.462 | 2.39 | -0.102 | 19.3 | 19.3 | 8 | -- | -- |
| 37.55 | 0.288 | 9.63 | -0.0916 | 0.666 | 0.607 | -0.726 | -- | -0.218 | 20 | 23.98 | 13 | -- | -- |
| 34.05 | 0.272 | 9.58 | 0.347 | 0.71 | 0.318 | -- | 2.44 | -0.0973 | 19.3 | 19.1 | 7 | -- | -- |
| 38.8 | 0.29 | 9.63 | -0.0656 | 0.685 | 0.523 | -- | -- | -0.216 | 19.6 | 23.25 | 4 | -- | -- |
| 58.02 | 0.355 | 9.57 | 0.211 | -- | 0.683 | -- | 2.18 | -0.163 | -- | 17.7 | 222 | -- | -- |
| 43.09 | 0.308 | 9.61 | 0.0256 | 0.774 | -- | -0.235 | -- | -0.142 | 18.7 | -- | -- | -- | -- |
| 43.21 | 0.308 | 9.61 | 0.03 | 0.774 | -- | -- | -- | -0.143 | 18.6 | -- | -- | -- | -- |
| 57.68 | 0.354 | 9.61 | -0.121 | -- | 0.764 | -- | -- | -0.241 | -- | 23.82 | 266 | -- | -- |
| 38.91 | 0.291 | 9.63 | -- | 0.687 | 0.512 | -- | -- | -0.208 | 19.5 | 23.3 | 7 | -- | -- |
| 74.41 | 0.403 | 9.6 | 0.0111 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 43.23 | 0.308 | 9.61 | -- | 0.774 | -- | -- | -- | -0.146 | 18.6 | -- | -- | -- | -- |
| 58.06 | 0.355 | 9.61 | -- | -- | 0.75 | -- | -- | -0.229 | -- | 23.8 | 266 | -- | -- |
| 74.41 | 0.403 | 9.6 | -- | -- | -- | -- | -- | -0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.59 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 2 | 29.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 3 | 29.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 4 | 29.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 13 | 29.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 14 | 29.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 18 |
| 21 | 29.60 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 30 | 29.73 | temperature | 20 | 10 | > th | dose dependent | sin | 3 | NA |
| 33 | 29.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 45 | 29.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 16 |
| 59 | 30.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 76 | 30.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 80 | 30.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 180 | 30.78 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 6 |
| 242 | 31.10 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 15 |
| 290 | 31.28 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 309 | 31.33 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 327 | 31.37 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 2 |
| 340 | 31.41 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 357 | 31.47 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 7 |
| 623 | 32.08 | wind | 5 | 270 | < th | dose independent | rect. | 7 | 7 |
| 851 | 32.56 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 898 | 32.67 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 8 |