BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0530400 Os01g0530400|AK106476
(185 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0530400 Glutaredoxin-related protein family protein 346 5e-96
Os01g0174900 Glutaredoxin-related protein family protein 304 2e-83
Os10g0500700 Glutaredoxin-related protein family protein 111 3e-25
Os03g0851200 Similar to CAXIP1 protein 95 3e-20
Os12g0175500 Similar to Glutaredoxin-like protein 87 5e-18
>Os01g0530400 Glutaredoxin-related protein family protein
Length = 185
Score = 346 bits (888), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 168/185 (90%), Positives = 168/185 (90%)
Query: 1 MARLMSSALIRGLVRSSCSPTVAAVAQPTIHQFRNYXXXXXXXXXXXXXXXXXRVAADPD 60
MARLMSSALIRGLVRSSCSPTVAAVAQPTIHQFRNY RVAADPD
Sbjct: 1 MARLMSSALIRGLVRSSCSPTVAAVAQPTIHQFRNYSSGLGGDSTATGDSSSTRVAADPD 60
Query: 61 THQDFQPTTKSSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPIS 120
THQDFQPTTKSSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPIS
Sbjct: 61 THQDFQPTTKSSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPIS 120
Query: 121 ARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKRE 180
ARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKRE
Sbjct: 121 ARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKRE 180
Query: 181 QNESS 185
QNESS
Sbjct: 181 QNESS 185
>Os01g0174900 Glutaredoxin-related protein family protein
Length = 185
Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/185 (80%), Positives = 159/185 (85%)
Query: 1 MARLMSSALIRGLVRSSCSPTVAAVAQPTIHQFRNYXXXXXXXXXXXXXXXXXRVAADPD 60
MARL+S+AL+RGLVRSS +P VAAV+QP I QFRNY RVAADPD
Sbjct: 1 MARLVSTALMRGLVRSSRAPRVAAVSQPAIQQFRNYSPGLGGDSRGSGDSSSTRVAADPD 60
Query: 61 THQDFQPTTKSSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPIS 120
THQDFQPT+KSSNMSFDDIV+QDIKENPVLIYMKG+P++P CGFSALAV+VLK YDVPIS
Sbjct: 61 THQDFQPTSKSSNMSFDDIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVLKLYDVPIS 120
Query: 121 ARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKRE 180
ARDILGDLKLKE VKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQK E
Sbjct: 121 ARDILGDLKLKECVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQKHE 180
Query: 181 QNESS 185
Q ESS
Sbjct: 181 QKESS 185
>Os10g0500700 Glutaredoxin-related protein family protein
Length = 384
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%)
Query: 61 THQDFQPTTKSSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPIS 120
Q+ T S+ + + + Q + +PV ++MKG P+ PRCGFS V VLKQ V
Sbjct: 135 AQQNGASATSSAEDALNKRLEQLVNSHPVFLFMKGTPEQPRCGFSRKVVDVLKQEGVEFG 194
Query: 121 ARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVL 172
+ DIL D ++E +K +NWPTFPQ++ KGE +GG DI++ MH+ G+LKDV
Sbjct: 195 SFDILTDNDVREGMKKFSNWPTFPQLYCKGELLGGCDIVIAMHESGELKDVF 246
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 62/86 (72%)
Query: 89 VLIYMKGYPDAPRCGFSALAVRVLKQYDVPISARDILGDLKLKESVKAHTNWPTFPQIFI 148
V+ ++KG P+ P+CGFS V +LKQ +P S+ DIL D ++++ +K +NWP++PQ++I
Sbjct: 299 VMAFIKGTPEEPKCGFSGKLVHILKQEKIPFSSFDILTDDEVRQGLKLLSNWPSYPQLYI 358
Query: 149 KGEFVGGSDIILDMHQKGQLKDVLGD 174
GE +GG DI+L++ + G+LK L +
Sbjct: 359 NGELIGGCDIVLELEKSGELKSTLSE 384
>Os03g0851200 Similar to CAXIP1 protein
Length = 168
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 62/89 (69%)
Query: 84 IKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPISARDILGDLKLKESVKAHTNWPTF 143
+ + V+++MKG D P+CGFS V++L+ DVP D+L + L++ +K +++WPTF
Sbjct: 74 VGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSSWPTF 133
Query: 144 PQIFIKGEFVGGSDIILDMHQKGQLKDVL 172
PQ++I GEF GG DI +D ++ G+L++ L
Sbjct: 134 PQLYIDGEFFGGCDITVDAYKSGELQETL 162
>Os12g0175500 Similar to Glutaredoxin-like protein
Length = 285
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 73 NMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVPISARDILGDLK--- 129
+ + ++ + +K+N V+ ++KG AP+CGFS V +L+ + V D+L +
Sbjct: 181 TVPLEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHG 240
Query: 130 LKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQL 168
L+E++K ++NWPTFPQ+F+ GE VGG DI+ M +KG+L
Sbjct: 241 LRETLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGEL 279
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,429,244
Number of extensions: 189220
Number of successful extensions: 406
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 6
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)