BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0851200 Os03g0851200|AK059425
(168 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54900.1 | chr3:20341850-20342371 REVERSE LENGTH=174 174 2e-44
AT4G04950.1 | chr4:2517882-2519924 REVERSE LENGTH=489 112 9e-26
AT2G38270.1 | chr2:16031347-16033054 REVERSE LENGTH=294 109 8e-25
AT3G15660.1 | chr3:5308134-5309383 REVERSE LENGTH=170 98 3e-21
AT5G20500.1 | chr5:6938652-6939665 FORWARD LENGTH=136 54 3e-08
AT5G63030.1 | chr5:25286352-25287517 FORWARD LENGTH=126 49 1e-06
>AT3G54900.1 | chr3:20341850-20342371 REVERSE LENGTH=174
Length = 173
Score = 174 bits (441), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 76/105 (72%), Positives = 95/105 (90%)
Query: 64 PEMRATLDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQG 123
P+++ TL+K+V S KVVLFMKGT+DFP CGFS+TVVQIL++L+VPFE +++L NE LRQG
Sbjct: 69 PQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQG 128
Query: 124 LKEYSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETLEKAMLS 168
LKEYS+WPTFPQLYI GEFFGGCDIT++A+K+GELQE +EKAM S
Sbjct: 129 LKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKAMCS 173
>AT4G04950.1 | chr4:2517882-2519924 REVERSE LENGTH=489
Length = 488
Score = 112 bits (280), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 73/98 (74%)
Query: 66 MRATLDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLK 125
+++ L+K+ SH V+LFMKG + P+CGFS VV IL+ ++V F + D+L++ +R+GLK
Sbjct: 153 LKSRLEKLTNSHPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDFGSFDILSDNEVREGLK 212
Query: 126 EYSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETLE 163
++S+WPTFPQLY +GE GG DI + ++SGEL++ +
Sbjct: 213 KFSNWPTFPQLYCNGELLGGADIAIAMHESGELKDAFK 250
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 68/93 (73%)
Query: 70 LDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLKEYSS 129
L ++ S +V+LFMKG+ D P+CGFS VV+ LR +V F + D+L +E +RQG+K +S+
Sbjct: 394 LKALINSSEVMLFMKGSPDEPKCGFSSKVVKALRGENVSFGSFDILTDEEVRQGIKNFSN 453
Query: 130 WPTFPQLYIDGEFFGGCDITVDAYKSGELQETL 162
WPTFPQLY GE GGCDI ++ +SG+L+ TL
Sbjct: 454 WPTFPQLYYKGELIGGCDIIMELSESGDLKATL 486
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 66 MRATLDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLK 125
+RA L+ +V S V+LFMKG + P+CGFS VV+IL + F + D+L ++ +RQGLK
Sbjct: 283 LRARLEGLVNSKPVMLFMKGRPEEPKCGFSGKVVEILNQEKIEFGSFDILLDDEVRQGLK 342
Query: 126 EYSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETL 162
YS+W ++PQLY+ GE GG DI ++ KSGEL++ L
Sbjct: 343 VYSNWSSYPQLYVKGELMGGSDIVLEMQKSGELKKVL 379
>AT2G38270.1 | chr2:16031347-16033054 REVERSE LENGTH=294
Length = 293
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 70 LDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVL---ANEALRQGLKE 126
+D++V KVV F+KG++ PQCGFS VV IL S V +ET+DVL N LR+ LK
Sbjct: 197 IDRLVKESKVVAFIKGSRSAPQCGFSQRVVGILESQGVDYETVDVLDDEYNHGLRETLKN 256
Query: 127 YSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETLE 163
YS+WPTFPQ+++ GE GGCDI Y++GEL L
Sbjct: 257 YSNWPTFPQIFVKGELVGGCDILTSMYENGELANILN 293
>AT3G15660.1 | chr3:5308134-5309383 REVERSE LENGTH=170
Length = 169
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 67/98 (68%)
Query: 66 MRATLDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGLK 125
++ ++ V + V+++MKG + PQCGFS V++L+ +VP + ++L ++ L+ +K
Sbjct: 65 LKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQELKNAVK 124
Query: 126 EYSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETLE 163
+S WPTFPQ++I GEF GG DI ++ +K GEL++ L+
Sbjct: 125 SFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLK 162
>AT5G20500.1 | chr5:6938652-6939665 FORWARD LENGTH=136
Length = 135
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 70 LDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLD-VPFETLDVLANE---ALRQGLK 125
+ K + SHK+V+F K C + + R LD VP+ +++ E +++ L
Sbjct: 35 VKKTISSHKIVIFSK-----SYCPYCKKAKSVFRELDQVPY-VVELDEREDGWSIQTALG 88
Query: 126 EYSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETL 162
E T PQ++I+G+ GG D TVDAY+SGEL + L
Sbjct: 89 EIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLL 125
>AT5G63030.1 | chr5:25286352-25287517 FORWARD LENGTH=126
Length = 125
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 65 EMRATLDK---VVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETL--DVLANEA 119
EM ++K +V ++ VV+F K CG+ V Q+L L F+ L D +++
Sbjct: 14 EMEVVVNKAKEIVSAYPVVVFSK-----TYCGYCQRVKQLLTQLGATFKVLELDEMSDGG 68
Query: 120 -LRQGLKEYSSWPTFPQLYIDGEFFGGCDITVDAYKSGEL 158
++ L E++ T P ++I G GGCD ++ K G+L
Sbjct: 69 EIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKL 108
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,154,661
Number of extensions: 114136
Number of successful extensions: 381
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 8
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)