BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0158300 Os12g0158300|J080307E12
(345 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0158300 Protein of unknown function DUF623, plant doma... 328 4e-90
Os11g0156300 Protein of unknown function DUF623, plant doma... 126 2e-29
Os04g0415100 Protein of unknown function DUF623, plant doma... 74 2e-13
Os01g0863800 Protein of unknown function DUF623, plant doma... 68 9e-12
Os05g0441400 Protein of unknown function DUF623, plant doma... 65 6e-11
>Os12g0158300 Protein of unknown function DUF623, plant domain containing protein
Length = 345
Score = 328 bits (840), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 169/245 (68%), Positives = 169/245 (68%)
Query: 1 MGKKGGLTSLFSRLAVAAADSPSCAKNPPHTASFRGFYYVDEPCTTAXXXXXXRSPAAGR 60
MGKKGGLTSLFSRLAVAAADSPSCAKNPPHTASFRGFYYVDEPCTTA RSPAAGR
Sbjct: 1 MGKKGGLTSLFSRLAVAAADSPSCAKNPPHTASFRGFYYVDEPCTTAGGGGGGRSPAAGR 60
Query: 61 LRKGGDEMYKTVNXXXXXXXXXXXXXXXXGCAFSGEXXXXXXRFSTTTAADEEWSEAVIR 120
LRKGGDEMYKTVN GCAFSGE RFSTTTAADEEWSEAVIR
Sbjct: 61 LRKGGDEMYKTVNSVFFDDSADAAHAVADGCAFSGEDDDDDDRFSTTTAADEEWSEAVIR 120
Query: 121 SLGRRTSTDRFFFDAGPGRPAATNSILATVXXXXXXXXXXXXXXXXXXXXXXXXXXXQLP 180
SLGRRTSTDRFFFDAGPGRPAATNSILATV QLP
Sbjct: 121 SLGRRTSTDRFFFDAGPGRPAATNSILATVRPRRPPPPPPPPPPAEEEKEKAAAEAAQLP 180
Query: 181 GKXXXXXXXXXXXXXXXXXXXXXDPYGDFRASMEEMVAAHGLRDWDALEELLSWYLRVNG 240
GK DPYGDFRASMEEMVAAHGLRDWDALEELLSWYLRVNG
Sbjct: 181 GKSSSTSSSQLVEESVAVAVESEDPYGDFRASMEEMVAAHGLRDWDALEELLSWYLRVNG 240
Query: 241 KHNHP 245
KHNHP
Sbjct: 241 KHNHP 245
>Os11g0156300 Protein of unknown function DUF623, plant domain containing protein
Length = 341
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 112/265 (42%), Gaps = 47/265 (17%)
Query: 1 MGKKGGLTSLFSRLAV------------AAADSPS---------CAKNPPHTASFRGFYY 39
M KK G TS+FSRL V AAA + C P +S R
Sbjct: 1 MAKKKGFTSIFSRLLVVTGGGDDERGGGAAATTSPSPPPWPWPSCGNRPRTVSSRR---- 56
Query: 40 VDEPCTTAXXXXXXRSPAAGRLRKGGDEMYKTVNXXXXXXXXXXXXXXXXGCAFSGEXXX 99
D C+T+ +A R+ EMYKTVN
Sbjct: 57 -DGGCSTSAAAAA----SAAAARRIAGEMYKTVNSVYFDYSAADGYSCFDDDDGRVVDDD 111
Query: 100 XXXRFSTTTAADEEWSEAVIRSLGRRTSTDRFFFDAGPGRPAATNSILATVXXXXXXXXX 159
+TT A EEWSEAVIRSLGR TSTDRFFFD GP TNSILA
Sbjct: 112 DDGDSFSTTTASEEWSEAVIRSLGR-TSTDRFFFDPGP----PTNSILAA-------AAV 159
Query: 160 XXXXXXXXXXXXXXXXXXQLPGKXXXXXXXXXXXXXXXXXXXXXDPYGDFRASMEEMVAA 219
+LP DPY DFR+SMEEMVAA
Sbjct: 160 PETKPVAAAAVFHDEEKEKLP-----EPPASLVEESVAVAVESEDPYSDFRSSMEEMVAA 214
Query: 220 HGLRDWDALEELLSWYLRVNGKHNH 244
HGLR WDALEELL WYLRVNGKHNH
Sbjct: 215 HGLRRWDALEELLVWYLRVNGKHNH 239
>Os04g0415100 Protein of unknown function DUF623, plant domain containing protein
Length = 327
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 36/41 (87%)
Query: 204 DPYGDFRASMEEMVAAHGLRDWDALEELLSWYLRVNGKHNH 244
DPYGDFR+SM +MVAAHGLRDW+ LEELL+WYL++N K H
Sbjct: 244 DPYGDFRSSMADMVAAHGLRDWEGLEELLAWYLKLNAKGVH 284
>Os01g0863800 Protein of unknown function DUF623, plant domain containing protein
Length = 244
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 31/41 (75%)
Query: 204 DPYGDFRASMEEMVAAHGLRDWDALEELLSWYLRVNGKHNH 244
DPY DFR SMEEMV AHG+ +W LEE+L WYLR NGK H
Sbjct: 154 DPYVDFRVSMEEMVVAHGVGNWGWLEEMLGWYLRANGKDTH 194
>Os05g0441400 Protein of unknown function DUF623, plant domain containing protein
Length = 255
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 31/41 (75%)
Query: 204 DPYGDFRASMEEMVAAHGLRDWDALEELLSWYLRVNGKHNH 244
DPY DFRASM EM+AAHG+ DW LE +L WYLR NGK H
Sbjct: 163 DPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKETH 203
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,675,959
Number of extensions: 192708
Number of successful extensions: 444
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 5
Length of query: 345
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 243
Effective length of database: 11,709,973
Effective search space: 2845523439
Effective search space used: 2845523439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)