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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0158300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF623, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0638) R2 : 0.15
β1 : -1.02 (0.234) R2dD : 0.037 R2D : 0.0175
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.63 (0.207) R2dE : 0.119 R2E : 0.112
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.209 (0.138) R2dN8 : 0.0059 R2N8 : 0.00739
σ : 1.19
deviance : 654.53
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.78
memory length : 13
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.42
open length of G : 2.24

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
642.25 1.19 3.56 -1.15 0.0808 1.81 -0.707 -2.69 -0.204 1.51 90.09 11 3.48 2.2
649.85 1.19 3.54 -1.05 0.107 1.64 -1.01 -- -0.2 1.49 90.94 13 3.43 2.22
644.08 1.18 3.55 -1.14 0.0862 1.83 -- -3.01 -0.197 1.53 90 12 3.49 2.18
654.09 1.19 3.54 -1.02 0.0905 1.58 -- -- -0.214 1.97 90.97 13 3.43 2.23
644.49 1.18 3.56 -1.14 -- 1.85 -- -3.01 -0.195 -- 90.14 12 3.49 2.18
720.75 1.26 3.57 -0.924 0.633 -- -0.502 -- -0.392 4.05 -- -- -- --
721.43 1.26 3.57 -0.917 0.633 -- -- -- -0.389 4.22 -- -- -- --
654.53 1.19 3.54 -1.02 -- 1.63 -- -- -0.209 -- 90.78 13 3.42 2.24
681.46 1.22 3.52 -- 0.0882 1.52 -- -- -0.108 1.98 90.91 13 3.47 2.21
743.08 1.27 3.58 -0.892 -- -- -- -- -0.372 -- -- -- -- --
743.61 1.28 3.55 -- 0.615 -- -- -- -0.287 4.25 -- -- -- --
681.88 1.22 3.52 -- -- 1.56 -- -- -0.103 -- 90.73 13 3.44 2.23
764.07 1.29 3.55 -- -- -- -- -- -0.273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 661.06 radiation 1.0 720 > th dose dependent rect. 18 11
2 662.24 humidity 90.0 10 > th dose independent rect. 3 3
3 662.50 humidity 90.0 90 > th dose independent rect. 3 2
4 663.50 humidity 90.0 90 > th dose dependent rect. 3 2
6 666.20 wind 1.0 90 < th dose independent rect. 3 2
8 667.67 radiation 1.0 720 > th dose dependent rect. 18 1
18 668.06 temperature 25.0 90 < th dose independent rect. 3 2
20 668.94 radiation 1.0 270 < th dose dependent rect. 5 19
21 668.95 temperature 20.0 270 > th dose dependent rect. 12 20
22 669.35 temperature 20.0 270 > th dose dependent rect. 13 17
28 670.02 humidity 90.0 10 > th dose dependent rect. 3 3
30 670.24 radiation 10.0 1440 < th dose dependent rect. 18 7
32 670.45 temperature 25.0 270 < th dose independent rect. 5 19
34 670.47 radiation 10.0 1440 < th dose dependent rect. 18 11
35 670.52 wind 1.0 90 < th dose dependent rect. 3 2
36 670.76 temperature 20.0 270 > th dose independent rect. 24 5
41 671.07 radiation 1.0 1440 < th dose dependent rect. 21 8
49 671.60 temperature 20.0 270 > th dose independent rect. 23 7
68 672.17 radiation 1.0 270 < th dose independent rect. 5 19
77 672.83 wind 9.0 1440 < th dose independent rect. 22 3
81 673.08 radiation 1.0 270 < th dose dependent rect. 11 13
85 673.16 radiation 10.0 1440 < th dose dependent rect. 18 2
86 673.24 temperature 20.0 90 > th dose independent rect. 15 14
88 673.32 radiation 1.0 270 < th dose independent rect. 11 13
93 673.49 temperature 10.0 270 > th dose dependent rect. 14 15
105 673.82 wind 9.0 1440 < th dose independent rect. 22 5
130 674.78 temperature 30.0 4320 > th dose dependent rect. 18 1
152 675.00 humidity 90.0 10 > th dose dependent rect. 3 9
159 675.21 temperature 25.0 270 < th dose independent rect. 12 12
170 675.52 temperature 20.0 720 > th dose dependent rect. 16 12
183 675.88 temperature 20.0 270 > th dose independent rect. 24 19
186 675.90 temperature 20.0 90 > th dose dependent rect. 16 17
191 676.03 temperature 20.0 720 > th dose dependent rect. 16 9
193 676.06 temperature 10.0 270 > th dose dependent rect. 24 19
215 676.78 atmosphere 1010.0 90 < th dose dependent rect. 3 2
219 676.86 temperature 25.0 10 < th dose independent rect. 3 3
224 676.95 radiation 1.0 1440 < th dose independent rect. 18 11
232 677.11 temperature 20.0 720 > th dose dependent sin 14 NA
233 677.22 temperature 20.0 1440 > th dose dependent rect. 22 1
241 677.35 temperature 30.0 720 > th dose dependent rect. 18 1
255 677.37 temperature 25.0 270 < th dose independent rect. 24 4
265 677.59 radiation 1.0 1440 > th dose independent rect. 18 11
283 677.88 radiation 20.0 14400 < th dose independent rect. 1 5
285 677.90 radiation 20.0 14400 < th dose independent rect. 3 3
289 677.99 temperature 30.0 10 < th dose dependent rect. 18 9
296 678.02 temperature 30.0 90 < th dose dependent rect. 5 22
307 678.14 temperature 20.0 90 > th dose independent rect. 3 2
321 678.31 humidity 50.0 4320 < th dose dependent rect. 16 1
330 678.46 temperature 30.0 270 < th dose dependent rect. 4 20
333 678.50 radiation 1.0 1440 < th dose independent rect. 18 7
338 678.52 humidity 70.0 720 > th dose independent rect. 18 6
343 678.62 radiation 1.0 1440 < th dose dependent rect. 4 1
347 678.66 temperature 20.0 30 > th dose independent rect. 24 9
353 678.73 humidity 50.0 1440 < th dose independent rect. 16 1
355 678.75 humidity 60.0 720 < th dose dependent rect. 18 1
410 679.28 radiation 1.0 1440 < th dose independent rect. 18 2
415 679.32 radiation 1.0 1440 > th dose independent rect. 18 1
442 679.36 wind 1.0 90 < th dose dependent rect. 21 8
447 679.46 temperature 30.0 10 < th dose dependent rect. 6 21
462 679.62 wind 7.0 1440 < th dose independent rect. 24 1
468 679.65 radiation 30.0 1440 < th dose independent rect. 6 2
474 679.71 temperature 30.0 720 < th dose independent rect. 17 7
504 679.93 temperature 30.0 10 < th dose dependent rect. 13 14
505 679.94 humidity 60.0 720 < th dose independent rect. 18 1
514 679.99 radiation 30.0 1440 < th dose independent rect. 22 10
519 680.05 radiation 30.0 1440 > th dose independent rect. 16 16
539 680.12 humidity 70.0 4320 < th dose dependent rect. 18 1
541 680.13 temperature 25.0 1440 > th dose dependent rect. 16 22
545 680.16 temperature 25.0 270 > th dose independent rect. 13 8
600 680.54 radiation 30.0 1440 < th dose independent rect. 19 13
602 680.54 temperature 20.0 1440 > th dose dependent rect. 20 13
603 680.55 wind 1.0 90 < th dose dependent rect. 16 13
615 680.58 temperature 30.0 270 < th dose dependent rect. 12 12
651 680.82 humidity 70.0 4320 < th dose dependent rect. 18 13
675 680.87 temperature 20.0 30 > th dose independent rect. 16 17
676 680.87 temperature 30.0 270 < th dose dependent rect. 15 9
694 680.99 temperature 10.0 270 > th dose dependent rect. 24 5
733 681.21 humidity 60.0 30 > th dose dependent rect. 24 9
734 681.22 wind 9.0 90 < th dose independent rect. 5 22
774 681.39 temperature 25.0 270 < th dose independent rect. 18 5
808 681.51 temperature 25.0 1440 > th dose dependent rect. 6 18
815 681.56 radiation 30.0 1440 < th dose independent rect. 17 15
824 681.61 temperature 20.0 1440 > th dose dependent rect. 7 1
838 681.65 temperature 10.0 10 > th dose dependent rect. 24 23
846 681.69 wind 1.0 4320 > th dose independent rect. 17 6
883 681.81 precipitation 0.1 90 < th dose independent rect. 3 2
885 681.81 precipitation 0.1 90 < th dose dependent rect. 3 2
910 681.84 temperature 25.0 1440 > th dose dependent rect. 11 23
948 681.93 temperature 15.0 10 > th dose dependent rect. 16 14
958 681.96 temperature 25.0 1440 > th dose dependent no NA NA
961 681.97 radiation 30.0 1440 > th dose independent rect. 7 1
986 681.99 temperature 20.0 1440 > th dose dependent rect. 1 1
987 681.99 temperature 20.0 1440 > th dose dependent rect. 24 9