BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0158300 Os12g0158300|J080307E12
         (345 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04820.1  | chr5:1399685-1400467 FORWARD LENGTH=261             68   9e-12
AT2G36050.1  | chr2:15135852-15136637 REVERSE LENGTH=262           57   2e-08
AT3G52540.1  | chr3:19488716-19489564 REVERSE LENGTH=283           55   7e-08

>AT5G04820.1 | chr5:1399685-1400467 FORWARD LENGTH=261
          Length = 260

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 36/43 (83%), Gaps = 2/43 (4%)

Query: 204 DPYGDFRASMEEMVAAHG--LRDWDALEELLSWYLRVNGKHNH 244
           DPYGDFR SMEEMV +HG   +DW++LE +L+WYLR+NG+ +H
Sbjct: 156 DPYGDFRRSMEEMVTSHGELAKDWESLESMLAWYLRMNGRKSH 198



>AT2G36050.1 | chr2:15135852-15136637 REVERSE LENGTH=262
          Length = 261

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 204 DPYGDFRASMEEMVAAHGL-RDWDALEELLSWYLRVNGKHNH 244
           DPY DF+ SMEEMV AH L  DW +LE+LL  +L+VN K +H
Sbjct: 118 DPYSDFKRSMEEMVEAHALHHDWKSLEKLLLQFLKVNAKTSH 159



>AT3G52540.1 | chr3:19488716-19489564 REVERSE LENGTH=283
          Length = 282

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 204 DPYGDFRASMEEMVAAHGLR-DWDALEELLSWYLRVNGKHNH 244
           DPY DF+ SME+MV  H L  DW +LE+LL W+L+VN K +H
Sbjct: 145 DPYTDFKNSMEKMVEVHVLHHDWISLEKLLFWFLKVNVKASH 186



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,920,583
Number of extensions: 102764
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)