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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0863800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF623, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0295) R2 : 0.00733
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.114 (0.0621) R2dN8 : 0.00947 R2N8 : 0.00733
σ : 0.555
deviance : 141.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
136.05 0.548 3.29 -0.039 0.156 8.61 0.428 -30.6 0.125 7.29 1.5 93 -- --
137.57 0.546 3.25 0.124 0.126 1.68 0.767 -- 0.149 5.09 1.541 59 -- --
136.41 0.544 3.29 -0.0299 0.159 8.81 -- -31.8 0.126 8.39 1.503 130 -- --
137.05 0.545 3.26 0.0653 0.163 1.59 -- -- 0.127 8.46 1.5 59 -- --
137.81 0.547 3.29 -0.0349 -- 9.16 -- -33.7 0.127 -- 1.555 130 -- --
139.9 0.555 3.27 0.0742 0.142 -- 0.297 -- 0.122 7.73 -- -- -- --
140.08 0.554 3.27 0.0833 0.144 -- -- -- 0.122 8.69 -- -- -- --
138.53 0.548 3.27 0.0633 -- 1.52 -- -- 0.126 -- 1.5 89 -- --
137.16 0.545 3.27 -- 0.164 1.63 -- -- 0.121 8.46 1.5 155 -- --
141.25 0.555 3.27 0.0836 -- -- -- -- 0.123 -- -- -- -- --
140.26 0.554 3.27 -- 0.144 -- -- -- 0.113 8.65 -- -- -- --
138.65 0.548 3.27 -- -- 1.53 -- -- 0.12 -- 1.5 103 -- --
141.43 0.555 3.27 -- -- -- -- -- 0.114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 131.72 wind 3.0 30 > th dose independent rect. 8 1
2 131.96 temperature 10.0 1440 > th dose independent rect. 9 1
5 131.96 atmosphere 995.0 1440 > th dose independent rect. 9 1
8 131.96 atmosphere 1015.0 1440 < th dose independent rect. 9 1
9 131.96 temperature 10.0 1440 > th dose independent rect. 10 23
12 132.00 atmosphere 1005.0 30 > th dose independent rect. 8 1
13 132.01 atmosphere 1005.0 30 > th dose dependent rect. 8 1
14 132.02 humidity 80.0 30 < th dose independent rect. 8 1
15 132.04 wind 1.0 30 > th dose dependent rect. 8 1
16 132.09 temperature 25.0 30 > th dose independent rect. 8 1
17 132.16 temperature 25.0 30 > th dose dependent rect. 8 1
21 132.27 humidity 90.0 30 < th dose dependent rect. 8 1
25 132.33 radiation 20.0 30 < th dose independent rect. 8 1
27 132.36 radiation 40.0 30 < th dose dependent rect. 8 1
29 132.39 radiation 10.0 30 > th dose independent rect. 8 1
31 132.42 wind 7.0 30 < th dose independent rect. 8 1
33 132.42 temperature 10.0 30 > th dose independent rect. 8 1
35 132.42 temperature 30.0 30 < th dose independent rect. 8 1
36 132.42 humidity 50.0 30 > th dose independent rect. 8 1
39 132.42 atmosphere 995.0 30 > th dose independent rect. 8 1
40 132.42 atmosphere 1010.0 30 < th dose independent rect. 8 1
43 132.42 precipitation 0.1 30 < th dose independent rect. 8 1
44 132.42 temperature 10.0 30 > th dose independent rect. 9 23
46 132.42 precipitation 0.1 30 < th dose dependent rect. 8 1
54 132.57 wind 9.0 30 < th dose dependent rect. 8 1
55 132.59 humidity 50.0 30 > th dose dependent rect. 8 1
56 132.63 radiation 1.0 30 > th dose dependent rect. 8 1
62 132.82 wind 9.0 30 < th dose independent rect. 9 23
67 133.01 atmosphere 1015.0 30 < th dose dependent rect. 8 1
74 133.34 temperature 25.0 720 > th dose independent rect. 22 1
75 133.38 temperature 25.0 720 > th dose dependent rect. 22 1
80 133.54 temperature 30.0 30 < th dose dependent rect. 8 1
81 133.58 radiation 30.0 43200 < th dose independent rect. 17 13
85 133.71 precipitation 0.1 720 < th dose independent rect. 5 16
86 133.71 precipitation 0.1 720 < th dose dependent rect. 5 16
89 133.79 temperature 15.0 90 > th dose independent rect. 5 11
92 133.86 wind 7.0 90 < th dose independent rect. 5 11
111 133.96 wind 7.0 720 < th dose independent rect. 17 1
115 134.09 temperature 25.0 90 > th dose dependent rect. 22 11
119 134.12 temperature 25.0 720 > th dose dependent rect. 21 8
120 134.14 temperature 15.0 720 > th dose independent rect. 18 23
122 134.21 temperature 15.0 720 > th dose independent rect. 5 1
124 134.24 temperature 25.0 720 > th dose independent rect. 21 12
129 134.37 temperature 25.0 720 > th dose dependent rect. 21 11
132 134.42 temperature 15.0 720 > th dose independent rect. 6 23
133 134.42 temperature 25.0 10 < th dose dependent rect. 16 2
139 134.49 radiation 10.0 4320 > th dose independent rect. 5 1
151 134.50 radiation 40.0 90 < th dose dependent rect. 16 13
152 134.51 temperature 15.0 30 > th dose independent rect. 5 23
158 134.56 temperature 15.0 720 > th dose independent rect. 9 8
162 134.58 radiation 20.0 4320 < th dose independent rect. 2 4
170 134.64 radiation 1.0 30 < th dose dependent rect. 4 14
172 134.67 precipitation 0.1 720 < th dose independent rect. 9 8
173 134.67 wind 9.0 90 < th dose independent rect. 16 13
174 134.67 precipitation 0.1 720 < th dose dependent rect. 9 8
175 134.68 radiation 10.0 720 < th dose dependent rect. 5 1
177 134.70 atmosphere 1015.0 1440 < th dose independent rect. 2 4
178 134.70 temperature 10.0 1440 > th dose independent rect. 6 11
181 134.70 temperature 10.0 1440 > th dose independent rect. 17 13
184 134.70 radiation 30.0 1440 < th dose independent rect. 17 13
191 134.71 temperature 25.0 720 < th dose independent rect. 19 13
194 134.73 wind 9.0 14400 < th dose independent rect. 12 1
197 134.73 precipitation 0.1 90 < th dose independent rect. 5 11
198 134.73 radiation 20.0 90 < th dose independent rect. 16 13
199 134.73 wind 7.0 14400 > th dose dependent rect. 11 2
200 134.73 precipitation 0.1 90 < th dose dependent rect. 5 11
203 134.76 atmosphere 1015.0 90 < th dose independent rect. 5 11
205 134.76 temperature 10.0 90 > th dose independent rect. 16 13
209 134.76 temperature 25.0 10 < th dose dependent rect. 11 8
216 134.81 temperature 15.0 14400 < th dose independent rect. 8 2
218 134.81 temperature 25.0 720 < th dose independent rect. 20 10
219 134.81 wind 9.0 720 < th dose independent rect. 17 16
220 134.82 temperature 15.0 14400 < th dose independent rect. 5 6
223 134.84 temperature 15.0 14400 < th dose independent rect. 4 9
225 134.84 atmosphere 995.0 30 > th dose independent rect. 9 23
232 134.88 temperature 15.0 14400 > th dose independent rect. 6 5
240 134.89 humidity 80.0 43200 < th dose dependent rect. 4 3
241 134.90 wind 1.0 720 > th dose independent rect. 17 1
242 134.90 wind 9.0 14400 < th dose independent rect. 8 5
243 134.90 wind 9.0 14400 < th dose independent rect. 5 8
246 134.92 temperature 15.0 14400 < th dose independent sin 3 NA
247 134.92 temperature 15.0 14400 > th dose independent rect. 5 8
248 134.92 atmosphere 995.0 90 > th dose independent rect. 5 11
260 134.95 temperature 15.0 14400 < th dose independent rect. 21 15
268 134.97 temperature 15.0 14400 < th dose independent rect. 24 13
279 134.98 wind 7.0 14400 > th dose dependent rect. 5 8
280 134.99 radiation 20.0 720 < th dose independent rect. 17 1
284 134.99 atmosphere 995.0 90 > th dose independent rect. 16 13
288 134.99 wind 9.0 4320 > th dose dependent rect. 18 2
290 134.99 temperature 25.0 90 > th dose dependent rect. 2 7
309 135.01 wind 9.0 14400 > th dose independent rect. 7 6
326 135.02 wind 7.0 14400 > th dose independent rect. 11 2
329 135.02 wind 9.0 14400 < th dose independent rect. 2 11
350 135.04 temperature 25.0 720 < th dose independent rect. 5 1
361 135.04 temperature 25.0 30 < th dose dependent rect. 14 5
370 135.06 temperature 15.0 14400 < th dose independent rect. 5 3
387 135.07 atmosphere 1000.0 30 > th dose dependent rect. 4 1
391 135.08 temperature 10.0 720 > th dose independent rect. 17 1
392 135.08 atmosphere 1015.0 720 < th dose independent rect. 17 1
401 135.08 wind 7.0 14400 > th dose dependent rect. 7 6
402 135.09 temperature 15.0 14400 > th dose independent sin 1 NA
430 135.10 radiation 10.0 4320 > th dose dependent rect. 5 1
448 135.11 humidity 50.0 14400 > th dose independent rect. 18 12
455 135.12 temperature 15.0 14400 < th dose independent rect. 22 6
463 135.13 temperature 15.0 14400 < th dose independent no NA NA
468 135.13 temperature 15.0 14400 < th dose independent rect. 7 23
470 135.13 temperature 15.0 14400 < th dose independent rect. 24 23
473 135.13 wind 7.0 14400 > th dose dependent rect. 24 13
479 135.14 temperature 15.0 14400 < th dose independent rect. 2 23
482 135.14 precipitation 0.1 30 < th dose independent rect. 9 23
487 135.14 precipitation 0.1 30 < th dose dependent rect. 9 23
488 135.15 atmosphere 1005.0 30 > th dose independent rect. 4 1
503 135.16 radiation 20.0 4320 < th dose independent rect. 5 1
510 135.16 wind 9.0 14400 < th dose independent rect. 22 15
529 135.17 radiation 1.0 30 < th dose independent rect. 4 14
530 135.17 temperature 15.0 14400 > th dose independent rect. 21 16
533 135.17 wind 9.0 30 < th dose independent rect. 5 23
544 135.18 wind 3.0 30 < th dose independent rect. 4 1
546 135.18 precipitation 0.1 30 < th dose independent rect. 4 1
549 135.18 temperature 15.0 14400 < th dose independent rect. 23 2
555 135.18 temperature 15.0 14400 > th dose independent rect. 21 19
558 135.18 temperature 15.0 14400 > th dose independent rect. 5 22
562 135.18 precipitation 0.1 30 < th dose dependent rect. 4 1
568 135.19 temperature 10.0 30 > th dose independent rect. 4 1
570 135.19 temperature 30.0 30 < th dose independent rect. 4 1
571 135.19 humidity 50.0 30 > th dose independent rect. 4 1
575 135.19 atmosphere 1010.0 30 < th dose independent rect. 4 1
577 135.19 radiation 1.0 30 < th dose independent rect. 4 1
583 135.19 temperature 15.0 14400 > th dose independent rect. 22 5
589 135.19 temperature 25.0 90 > th dose independent rect. 22 11
596 135.19 temperature 15.0 14400 > th dose independent rect. 7 22
599 135.19 wind 9.0 720 < th dose independent rect. 6 23
602 135.19 temperature 10.0 30 > th dose dependent rect. 4 1
603 135.19 radiation 30.0 30 < th dose dependent rect. 4 1
625 135.20 radiation 10.0 30 < th dose dependent rect. 4 1
640 135.21 temperature 15.0 14400 > th dose independent rect. 18 19
642 135.21 precipitation 0.1 30 < th dose independent rect. 5 23
643 135.21 precipitation 0.1 30 < th dose dependent rect. 5 23
644 135.22 temperature 15.0 14400 > th dose independent rect. 22 2
663 135.22 temperature 30.0 30 < th dose dependent rect. 4 1
665 135.22 humidity 80.0 43200 < th dose dependent rect. 2 6
698 135.24 wind 7.0 720 < th dose independent rect. 5 1
700 135.24 temperature 15.0 14400 > th dose independent rect. 2 1
703 135.24 humidity 50.0 720 > th dose independent rect. 5 1
706 135.24 atmosphere 995.0 720 > th dose independent rect. 5 1
707 135.24 atmosphere 1015.0 720 < th dose independent rect. 5 1
708 135.24 radiation 20.0 720 < th dose independent rect. 5 1
717 135.24 temperature 15.0 720 > th dose independent rect. 5 16
740 135.24 wind 9.0 90 < th dose dependent rect. 5 11
758 135.25 temperature 15.0 14400 > th dose independent rect. 24 23
759 135.25 humidity 50.0 30 > th dose dependent rect. 4 1
765 135.25 precipitation 0.1 270 > th dose dependent rect. 7 11
774 135.26 humidity 50.0 90 > th dose independent rect. 16 13
788 135.27 temperature 15.0 14400 > th dose independent no NA NA
795 135.27 temperature 15.0 14400 > th dose independent rect. 2 21
803 135.28 temperature 25.0 14400 < th dose independent rect. 4 1
822 135.28 wind 9.0 30 < th dose dependent rect. 4 1
827 135.29 wind 1.0 43200 < th dose independent rect. 22 6
830 135.29 wind 9.0 14400 > th dose independent rect. 23 14
839 135.29 radiation 40.0 720 < th dose dependent rect. 17 1
870 135.31 temperature 15.0 14400 > th dose independent rect. 24 13
927 135.34 temperature 25.0 720 > th dose independent rect. 21 8
942 135.34 atmosphere 1015.0 30 < th dose dependent rect. 4 1
978 135.36 temperature 25.0 90 < th dose independent rect. 16 2
1000 135.37 precipitation 0.1 270 > th dose independent rect. 9 9