BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0863800 Os01g0863800|Os01g0863800
(244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0863800 Protein of unknown function DUF623, plant doma... 329 1e-90
Os05g0441400 Protein of unknown function DUF623, plant doma... 170 7e-43
Os04g0685000 Protein of unknown function DUF623, plant doma... 91 6e-19
Os11g0156300 Protein of unknown function DUF623, plant doma... 85 4e-17
Os08g0102400 83 2e-16
Os12g0158300 Protein of unknown function DUF623, plant doma... 79 3e-15
Os04g0415100 Protein of unknown function DUF623, plant doma... 69 3e-12
>Os01g0863800 Protein of unknown function DUF623, plant domain containing protein
Length = 244
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 179/244 (73%), Positives = 179/244 (73%)
Query: 1 MVIGRLALSSFFHNKARDXXXXXXXXXXXXXXWVWPSCKNPRTQSFRAATAPPPPPGSRT 60
MVIGRLALSSFFHNKARD WVWPSCKNPRTQSFRAATAPPPPPGSRT
Sbjct: 1 MVIGRLALSSFFHNKARDTSPSPPPAPATAPPWVWPSCKNPRTQSFRAATAPPPPPGSRT 60
Query: 61 IASIFLDSAESSFTTSSARHDCSDSLXXXXXXXXXXXXXXXXXXXIVRGLRSSDRLLFDP 120
IASIFLDSAESSFTTSSARHDCSDSL IVRGLRSSDRLLFDP
Sbjct: 61 IASIFLDSAESSFTTSSARHDCSDSLSTASEASAGAEAADTADDAIVRGLRSSDRLLFDP 120
Query: 121 GASATSSILEEKSSDAAGEASFIGGVAVAFESEDPYVDFRVSMEEMVVAHGVGNWGWLEE 180
GASATSSILEEKSSDAAGEASFIGGVAVAFESEDPYVDFRVSMEEMVVAHGVGNWGWLEE
Sbjct: 121 GASATSSILEEKSSDAAGEASFIGGVAVAFESEDPYVDFRVSMEEMVVAHGVGNWGWLEE 180
Query: 181 MLGWYLRANGKDTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITEESSLEVAEKQA 240
MLGWYLRANGKDTH ITEESSLEVAEKQA
Sbjct: 181 MLGWYLRANGKDTHAAILAAFIDVIVAIADPALASCSSHRRSSTCTITEESSLEVAEKQA 240
Query: 241 KLAV 244
KLAV
Sbjct: 241 KLAV 244
>Os05g0441400 Protein of unknown function DUF623, plant domain containing protein
Length = 255
Score = 170 bits (431), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/208 (52%), Positives = 128/208 (61%), Gaps = 20/208 (9%)
Query: 2 VIGRLALSSFFH--NKARD-XXXXXXXXXXXXXXWVWPSCKNPRTQSFRAATAPPPPPGS 58
++ +L LSS + N ARD W+WPSCK+PR SFR+ +A +
Sbjct: 1 MVRKLPLSSVLYTINSARDIPPSSPPPPAATPPAWMWPSCKHPRAHSFRSPSAASAAAAA 60
Query: 59 RTIASIFLDSAESSFTTSSAR--HDC-SDSLXXXXXXXXXXXXXXXXXXXIVRGLRSSDR 115
+TIASIFLDS ESSF SSAR HDC SDSL IVRGLRS DR
Sbjct: 61 KTIASIFLDSGESSFANSSARMHHDCASDSLSTESDVSATAEDMADA---IVRGLRS-DR 116
Query: 116 LLFDPGASATSSILEEK---------SSDAAGEASFIGGVAVAFESEDPYVDFRVSMEEM 166
LLF+P A +SSIL++K D G ASF GGVAVAF+SEDPY DFR SM EM
Sbjct: 117 LLFEPRAP-SSSILDKKPVRRAAGGGDDDDDGAASFGGGVAVAFDSEDPYEDFRASMAEM 175
Query: 167 VVAHGVGNWGWLEEMLGWYLRANGKDTH 194
+ AHGVG+WGWLE MLGWYLRANGK+TH
Sbjct: 176 LAAHGVGDWGWLEAMLGWYLRANGKETH 203
>Os04g0685000 Protein of unknown function DUF623, plant domain containing protein
Length = 246
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 6/93 (6%)
Query: 106 IVRGLRSSDR-LLFDPGASATSSILEEKSSDAAGEASFIGGVAVAFESEDPYVDFRVSME 164
I+RGLRSS+R L F+P +TSSI+ + + A A+F G A++ +S DPY DFR SME
Sbjct: 117 IIRGLRSSNRRLFFEP--ESTSSIVVKGRAVDADAAAFDGATAMSIDSADPYGDFRRSME 174
Query: 165 EMVVAHGVG---NWGWLEEMLGWYLRANGKDTH 194
EMV++H G +WGWLEEMLGWYLRANGK TH
Sbjct: 175 EMVMSHMSGGGHDWGWLEEMLGWYLRANGKKTH 207
>Os11g0156300 Protein of unknown function DUF623, plant domain containing protein
Length = 341
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 57/106 (53%), Gaps = 21/106 (19%)
Query: 109 GLRSSDRLLFDPGASATSSIL-------------------EEKSSDAAGEASFIG-GVAV 148
G S+DR FDPG T+SIL EEK AS + VAV
Sbjct: 135 GRTSTDRFFFDPGPP-TNSILAAAAVPETKPVAAAAVFHDEEKEKLPEPPASLVEESVAV 193
Query: 149 AFESEDPYVDFRVSMEEMVVAHGVGNWGWLEEMLGWYLRANGKDTH 194
A ESEDPY DFR SMEEMV AHG+ W LEE+L WYLR NGK H
Sbjct: 194 AVESEDPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNH 239
>Os08g0102400
Length = 271
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 33 WVWPSCKNPRTQSFRAATAPPPPPGSRTIASIFLDSAESSFTTSSARHDCSDSLXXXXXX 92
W WPSCK PRT SFR +T+ S +L + S + S CS
Sbjct: 56 WQWPSCKQPRTLSFR----QQQQTMMKTMNSAYLSAGFSFASRDSHSSTCS------CCR 105
Query: 93 XXXXXXXXXXXXXIVRGLRSSDRLLFDPGASATSSILEEKSSDAAGEA-----SFIGGVA 147
+ R LRS DRL FDP AS ++ + + A + +F G A
Sbjct: 106 SRTASDASASADAVTRALRS-DRLFFDPDASPAAAADLKLNKAKANKTKKKVEAFGGATA 164
Query: 148 VAFESEDPYVDFRVSMEEMVVAHG----VGNWGWLEEMLGWYLRANGKDTH 194
+ ES +PY DFR SME MV + G +W WLEEMLGWYLRAN K TH
Sbjct: 165 MTIESSNPYRDFRESMEAMVTSGGGGGGADDWRWLEEMLGWYLRANVKSTH 215
>Os12g0158300 Protein of unknown function DUF623, plant domain containing protein
Length = 345
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 38/49 (77%)
Query: 146 VAVAFESEDPYVDFRVSMEEMVVAHGVGNWGWLEEMLGWYLRANGKDTH 194
VAVA ESEDPY DFR SMEEMV AHG+ +W LEE+L WYLR NGK H
Sbjct: 196 VAVAVESEDPYGDFRASMEEMVAAHGLRDWDALEELLSWYLRVNGKHNH 244
>Os04g0415100 Protein of unknown function DUF623, plant domain containing protein
Length = 327
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 37/125 (29%)
Query: 106 IVRGLRSSDRLLFDPGAS----------------ATSSILEEKSSDAAGEASFI------ 143
+VRG+RS +RL F+P + AT+ + + +D EA+ +
Sbjct: 161 VVRGVRS-ERLFFEPAGAEFLPKQEMARGKNDDEATAMDVVARKNDDVDEATPMTTPQTG 219
Query: 144 --------------GGVAVAFESEDPYVDFRVSMEEMVVAHGVGNWGWLEEMLGWYLRAN 189
G V + ESEDPY DFR SM +MV AHG+ +W LEE+L WYL+ N
Sbjct: 220 KNEAEAAEAAALKGGAVVLTVESEDPYGDFRSSMADMVAAHGLRDWEGLEELLAWYLKLN 279
Query: 190 GKDTH 194
K H
Sbjct: 280 AKGVH 284
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,117,791
Number of extensions: 210455
Number of successful extensions: 2602
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2592
Number of HSP's successfully gapped: 7
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)