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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0156300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF623, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.34 (0.066) R2 : 0.338
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.63 (0.396) R2dC : 0.678 R2C : -1.1
β3 : 6.29 (0.473) R2dE : 1.43 R2E : -0.339
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.201 (0.137) R2dN8 : 0.00411 R2N8 : 0.00644
σ : 1.21
deviance : 679.76
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_____
C
peak time of C : 19
E
wheather : humidity
threshold : 73
memory length : 698
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 6.75
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
669.03 1.22 4.34 0.0479 3.62 6.31 -1.04 -3.45 0.201 18.9 73.53 696 6.8 --
674.68 1.21 4.34 0.0666 3.52 6.22 1.42 -- 0.196 18.9 73 698 6.87 --
669.72 1.21 4.35 0.0599 3.76 6.43 -- -2.41 0.194 19 73.59 694 6.68 --
679.74 1.21 4.34 0.036 3.65 6.33 -- -- 0.204 19 73.01 698 6.78 --
831.62 1.34 4.28 0.22 -- 6.26 -- -2.7 0.271 -- 78 1776 6.56 --
773.53 1.3 4.2 -0.0779 2.04 -- -1.61 -- 0.37 3.56 -- -- -- --
781.38 1.31 4.2 -0.0511 2.03 -- -- -- 0.379 3.48 -- -- -- --
734.78 1.26 4.17 -0.00375 -- 3.08 -- -- 0.534 -- 71.05 1896 6.88 --
679.76 1.21 4.34 -- 3.63 6.29 -- -- 0.201 19 73 698 6.75 --
1011.4 1.49 4.2 0.0343 -- -- -- -- 0.433 -- -- -- -- --
781.45 1.31 4.2 -- 2.03 -- -- -- 0.385 3.48 -- -- -- --
728.31 1.26 4.2 -- -- 2.97 -- -- 0.416 -- 73.77 1795 5.78 --
1011.43 1.48 4.2 -- -- -- -- -- 0.429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 683.05 radiation 10 720 < th dose independent rect. 14 9
2 683.07 humidity 70 720 > th dose independent rect. 15 17
3 684.23 humidity 70 720 < th dose independent rect. 15 17
5 684.46 humidity 50 720 > th dose dependent rect. 15 8
8 684.99 humidity 70 720 > th dose independent rect. 15 8
25 686.82 humidity 70 720 > th dose independent sin 13 NA
28 687.20 wind 7 4320 > th dose independent rect. 18 1
30 687.33 wind 7 4320 < th dose independent rect. 18 1
33 687.56 humidity 80 720 < th dose dependent rect. 15 17
41 688.16 humidity 70 720 < th dose independent rect. 14 6
69 688.66 humidity 70 720 < th dose independent sin 13 NA
73 689.19 radiation 20 1440 < th dose dependent rect. 11 1
83 689.55 humidity 80 720 < th dose dependent rect. 15 12
85 689.62 humidity 90 720 < th dose dependent rect. 15 6
97 689.94 humidity 80 720 < th dose dependent sin 12 NA
121 691.09 humidity 60 720 > th dose dependent sin 17 NA
149 692.03 wind 7 4320 > th dose dependent rect. 18 1
160 692.36 humidity 80 720 > th dose independent rect. 11 11
238 694.52 humidity 70 720 > th dose dependent rect. 19 2
243 694.71 wind 7 4320 < th dose independent rect. 17 3
258 695.02 radiation 20 720 < th dose dependent rect. 14 9
269 695.22 humidity 50 720 > th dose dependent rect. 14 17
322 696.34 radiation 20 1440 < th dose dependent rect. 11 6
348 697.08 radiation 20 1440 < th dose dependent rect. 11 3
388 697.56 radiation 20 1440 < th dose dependent rect. 11 13
397 697.63 radiation 20 1440 < th dose dependent rect. 11 16
413 697.86 radiation 20 1440 > th dose independent rect. 11 23
414 697.88 humidity 70 1440 > th dose independent rect. 18 20
422 698.05 radiation 20 1440 > th dose independent rect. 15 22
432 698.26 radiation 10 1440 < th dose independent rect. 13 4
442 698.45 radiation 10 720 < th dose independent rect. 14 16
465 698.78 radiation 20 1440 < th dose dependent rect. 11 20
472 698.93 radiation 1 1440 > th dose dependent rect. 11 2
503 699.25 humidity 70 1440 < th dose independent rect. 18 20
511 699.29 radiation 20 1440 > th dose independent rect. 15 17
517 699.37 radiation 40 1440 < th dose dependent rect. 11 1
544 699.65 radiation 20 1440 < th dose dependent sin 20 NA
547 699.75 radiation 1 1440 > th dose dependent rect. 11 6
548 699.76 radiation 10 1440 < th dose dependent rect. 13 1
571 699.99 radiation 20 1440 < th dose independent rect. 11 1
589 700.18 radiation 20 1440 < th dose independent rect. 11 13
596 700.24 radiation 20 1440 < th dose independent rect. 11 16
597 700.24 radiation 20 1440 < th dose independent rect. 11 19
644 700.57 radiation 20 1440 > th dose independent no NA NA
645 700.57 radiation 20 1440 > th dose independent rect. 6 11
743 700.62 radiation 10 1440 > th dose dependent rect. 11 22
789 700.97 radiation 1 1440 > th dose dependent sin 20 NA
798 701.00 radiation 20 1440 > th dose independent sin 13 NA
800 701.00 radiation 1 1440 > th dose dependent rect. 8 9
953 701.55 radiation 20 1440 > th dose independent sin 23 NA
991 701.68 radiation 10 1440 < th dose independent rect. 13 1