BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0156300 Os11g0156300|AK107140
(341 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04820.1 | chr5:1399685-1400467 FORWARD LENGTH=261 99 4e-21
AT2G36050.1 | chr2:15135852-15136637 REVERSE LENGTH=262 74 1e-13
AT3G52540.1 | chr3:19488716-19489564 REVERSE LENGTH=283 72 4e-13
AT1G05420.1 | chr1:1590073-1590753 FORWARD LENGTH=227 60 1e-09
AT1G79960.1 | chr1:30079665-30080549 REVERSE LENGTH=295 58 9e-09
AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316 54 9e-08
AT4G14860.1 | chr4:8516531-8517079 FORWARD LENGTH=183 53 2e-07
AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271 52 4e-07
AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350 51 9e-07
>AT5G04820.1 | chr5:1399685-1400467 FORWARD LENGTH=261
Length = 260
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 16/187 (8%)
Query: 75 RIAGEMYKTVNSVYFDY--SAADGYSCFXXXXXXXXXXXXXXXSFSTTTASEEWS----E 128
R+ +M KTVNSV+FD+ + +G + +T + ++ E
Sbjct: 34 RVGDDMIKTVNSVFFDHHHNNNNGGDLLEAETPESWFTNSSETASHSTESDQDLDAESLE 93
Query: 129 AVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFHDEEKEKLPEPPXXXXX 188
V+R + R+ +R FFDPG T+SIL + + E P
Sbjct: 94 MVVRGVVRS--ERLFFDPGV-TSSILEEIEEKSKSDLKSKETVAVGEDRSTP-----IEE 145
Query: 189 XXXXXXXXXXDPYSDFRSSMEEMVAAHG--LRRWDALEELLVWYLRVNGKHNHALIVAAF 246
DPY DFR SMEEMV +HG + W++LE +L WYLR+NG+ +H +IV+AF
Sbjct: 146 ISVAVAMESEDPYGDFRRSMEEMVTSHGELAKDWESLESMLAWYLRMNGRKSHGVIVSAF 205
Query: 247 VDLLVGL 253
VDLL GL
Sbjct: 206 VDLLSGL 212
>AT2G36050.1 | chr2:15135852-15136637 REVERSE LENGTH=262
Length = 261
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 128 EAVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFHDEEKEKLPEPPXXXX 187
E VI+ G S++R F+ TNSIL A +
Sbjct: 69 ENVIK--GLRSSERLIFESKGETNSILEEATSKREEEDEEEGFM---------------- 110
Query: 188 XXXXXXXXXXXDPYSDFRSSMEEMVAAHGLRR-WDALEELLVWYLRVNGKHNHALIVAAF 246
DPYSDF+ SMEEMV AH L W +LE+LL+ +L+VN K +H I AAF
Sbjct: 111 ----LFSLESDDPYSDFKRSMEEMVEAHALHHDWKSLEKLLLQFLKVNAKTSHRYIFAAF 166
Query: 247 VDLLVGL 253
VDLL+ L
Sbjct: 167 VDLLMNL 173
>AT3G52540.1 | chr3:19488716-19489564 REVERSE LENGTH=283
Length = 282
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 23/127 (18%)
Query: 128 EAVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFHDEEKEKLPEPPXXXX 187
E VI+ G S+ R F+ +NSIL A + H+EE++ L
Sbjct: 96 ENVIK--GLKSSKRLIFERRGTSNSILEEATKRDD---------HEEEEDGL-------- 136
Query: 188 XXXXXXXXXXXDPYSDFRSSMEEMVAAHGLRR-WDALEELLVWYLRVNGKHNHALIVAAF 246
DPY+DF++SME+MV H L W +LE+LL W+L+VN K +H I AAF
Sbjct: 137 ---MLLSLESNDPYTDFKNSMEKMVEVHVLHHDWISLEKLLFWFLKVNVKASHRYIFAAF 193
Query: 247 VDLLVGL 253
VDL++ L
Sbjct: 194 VDLVLNL 200
>AT1G05420.1 | chr1:1590073-1590753 FORWARD LENGTH=227
Length = 226
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 199 DPYSDFRSSMEEMV----AAHGLRRWDALEELLVWYLRVNGKHNHALIVAAFVDLLVGL 253
DPY+DFR SM+EM+ A LRR++ L ELL+ YL +N H I+ AF D+LV L
Sbjct: 160 DPYNDFRRSMQEMIDAVTNAGDLRRYEFLHELLLSYLSLNAADTHKFIIRAFADILVSL 218
>AT1G79960.1 | chr1:30079665-30080549 REVERSE LENGTH=295
Length = 294
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 199 DPYSDFRSSMEEMVAAH-GLRR----WDALEELLVWYLRVNGKHNHALIVAAFVDLLVGL 253
+P DFR SM EM+ + G+R WD +EELL YL +N K +H I++AFVDL++ L
Sbjct: 201 EPQEDFRQSMVEMMESKLGMRESEVDWDLMEELLFCYLDLNDKKSHKFILSAFVDLIIAL 260
>AT1G06920.1 | chr1:2124854-2125801 REVERSE LENGTH=316
Length = 315
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 199 DPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNHALIVAAFVDL 249
DP DFR SM EM+A + +R + +E+LLV YL +N K H LI+ FV +
Sbjct: 253 DPSKDFRESMVEMIAENNIRTSNDMEDLLVCYLTLNPKEYHDLIIKVFVQV 303
>AT4G14860.1 | chr4:8516531-8517079 FORWARD LENGTH=183
Length = 182
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 199 DPYSDFRSSMEEMVAAHGLRR-----WDALEELLVWYLRVNGKHNHALIVAAFVDLLVGL 253
DPY DF SM EMV A L R + L ELL YL +N KH H IV+AF D L+ L
Sbjct: 111 DPYRDFGRSMREMVEARDLTRDVVADREYLHELLFCYLYLNPKHTHRFIVSAFADTLLWL 170
>AT5G01840.1 | chr5:324552-325364 FORWARD LENGTH=271
Length = 270
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 199 DPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNHALIVAAFVDLLVGL 253
DP DF+ SMEEM+A + +R LEELL YL +N HA+I+ F + + L
Sbjct: 208 DPKRDFKESMEEMIAENKIRATKDLEELLACYLCLNSDEYHAIIINVFKQIWLDL 262
>AT4G18830.1 | chr4:10337449-10338498 FORWARD LENGTH=350
Length = 349
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 199 DPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNHALIVAAF 246
DP DFR SM EM+ +G+ + L+ELLV YLR+N H +I++ F
Sbjct: 292 DPQKDFRDSMIEMIMENGINHPEELKELLVCYLRLNTDEYHDMIISVF 339
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,035,146
Number of extensions: 151574
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 9
Length of query: 341
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 242
Effective length of database: 8,392,385
Effective search space: 2030957170
Effective search space used: 2030957170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)