BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0156300 Os11g0156300|AK107140
(341 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0156300 Protein of unknown function DUF623, plant doma... 414 e-116
Os12g0158300 Protein of unknown function DUF623, plant doma... 162 3e-40
Os01g0863800 Protein of unknown function DUF623, plant doma... 90 2e-18
Os04g0415100 Protein of unknown function DUF623, plant doma... 87 1e-17
Os05g0441400 Protein of unknown function DUF623, plant doma... 86 5e-17
Os04g0685000 Protein of unknown function DUF623, plant doma... 74 2e-13
>Os11g0156300 Protein of unknown function DUF623, plant domain containing protein
Length = 341
Score = 414 bits (1063), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/341 (64%), Positives = 221/341 (64%)
Query: 1 MAKKKGFTSIFSRLLVVXXXXXXXXXXXXXXXXXXXXXXXXXXXCGNRPRTVSSRRDGGC 60
MAKKKGFTSIFSRLLVV CGNRPRTVSSRRDGGC
Sbjct: 1 MAKKKGFTSIFSRLLVVTGGGDDERGGGAAATTSPSPPPWPWPSCGNRPRTVSSRRDGGC 60
Query: 61 STXXXXXXXXXXXRRIAGEMYKTVNSVYFDYSAADGYSCFXXXXXXXXXXXXXXXSFSTT 120
ST RRIAGEMYKTVNSVYFDYSAADGYSCF SFSTT
Sbjct: 61 STSAAAAASAAAARRIAGEMYKTVNSVYFDYSAADGYSCFDDDDGRVVDDDDDGDSFSTT 120
Query: 121 TASEEWSEAVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFHDEEKEKLP 180
TASEEWSEAVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFHDEEKEKLP
Sbjct: 121 TASEEWSEAVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFHDEEKEKLP 180
Query: 181 EPPXXXXXXXXXXXXXXXDPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNHA 240
EPP DPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNHA
Sbjct: 181 EPPASLVEESVAVAVESEDPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNHA 240
Query: 241 LIVAAFVDLLVGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXM 300
LIVAAFVDLLVGL M
Sbjct: 241 LIVAAFVDLLVGLAAAATTTGTTPTTTTTTSSGRSTASTSTACDITTTTTITTSSATATM 300
Query: 301 EPCPCGGGSSDDLXXXXXXARVMISLGASSCSLAPSTFANS 341
EPCPCGGGSSDDL ARVMISLGASSCSLAPSTFANS
Sbjct: 301 EPCPCGGGSSDDLEEEEEEARVMISLGASSCSLAPSTFANS 341
>Os12g0158300 Protein of unknown function DUF623, plant domain containing protein
Length = 345
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 134/280 (47%), Gaps = 49/280 (17%)
Query: 1 MAKKKGFTSIFSRLLVVXXXXXXXXXXXXXXXXXXXXXXXXXXXCGNRPRTVSSRR---- 56
M KK G TS+FSRL V C P +S R
Sbjct: 1 MGKKGGLTSLFSRLAVAAADSPS---------------------CAKNPPHTASFRGFYY 39
Query: 57 -DGGCSTXXXXXX----XXXXXRRIAGEMYKTVNSVYFDYSAADGYSCFXXXXXXXXXXX 111
D C+T R+ EMYKTVNSV+FD SA D
Sbjct: 40 VDEPCTTAGGGGGGRSPAAGRLRKGGDEMYKTVNSVFFDDSA-DAAHAVADGCAFSGEDD 98
Query: 112 XXXXSFSTTTAS-EEWSEAVIRSLGR-TSTDRFFFDPGP----PTNSILAAAAVPETKPV 165
FSTTTA+ EEWSEAVIRSLGR TSTDRFFFD GP TNSILA P
Sbjct: 99 DDDDRFSTTTAADEEWSEAVIRSLGRRTSTDRFFFDAGPGRPAATNSILATVRPRRPPPP 158
Query: 166 AAAAVFHDEEKE-------KLP-----EPPXXXXXXXXXXXXXXXDPYSDFRSSMEEMVA 213
+EEKE +LP DPY DFR+SMEEMVA
Sbjct: 159 PPPPPPAEEEKEKAAAEAAQLPGKSSSTSSSQLVEESVAVAVESEDPYGDFRASMEEMVA 218
Query: 214 AHGLRRWDALEELLVWYLRVNGKHNHALIVAAFVDLLVGL 253
AHGLR WDALEELL WYLRVNGKHNH LIVAAFVDLL+ L
Sbjct: 219 AHGLRDWDALEELLSWYLRVNGKHNHPLIVAAFVDLLLAL 258
>Os01g0863800 Protein of unknown function DUF623, plant domain containing protein
Length = 244
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 65/123 (52%), Gaps = 27/123 (21%)
Query: 135 GRTSTDRFFFDPGP-PTNSIL---AAAAVPETKPVAAAAVFHDEEKEKLPEPPXXXXXXX 190
G S+DR FDPG T+SIL ++ A E + AV + E
Sbjct: 109 GLRSSDRLLFDPGASATSSILEEKSSDAAGEASFIGGVAVAFESE--------------- 153
Query: 191 XXXXXXXXDPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNHALIVAAFVDLL 250
DPY DFR SMEEMV AHG+ W LEE+L WYLR NGK HA I+AAF+D++
Sbjct: 154 --------DPYVDFRVSMEEMVVAHGVGNWGWLEEMLGWYLRANGKDTHAAILAAFIDVI 205
Query: 251 VGL 253
V +
Sbjct: 206 VAI 208
>Os04g0415100 Protein of unknown function DUF623, plant domain containing protein
Length = 327
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 44/55 (80%)
Query: 199 DPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHNHALIVAAFVDLLVGL 253
DPY DFRSSM +MVAAHGLR W+ LEELL WYL++N K H +IV AF+D+LV L
Sbjct: 244 DPYGDFRSSMADMVAAHGLRDWEGLEELLAWYLKLNAKGVHGVIVGAFIDMLVSL 298
>Os05g0441400 Protein of unknown function DUF623, plant domain containing protein
Length = 255
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 119 TTTASEEWSEAVIRSLGRTSTDRFFFDPGPPTNSILAAAAVPETKPVAAAAVFHDEEKEK 178
+ +E+ ++A++R L +DR F+P P++SIL + KPV
Sbjct: 97 VSATAEDMADAIVRGL---RSDRLLFEPRAPSSSIL------DKKPVR-----RAAGGGD 142
Query: 179 LPEPPXXXXXXXXXXXXXXXDPYSDFRSSMEEMVAAHGLRRWDALEELLVWYLRVNGKHN 238
+ DPY DFR+SM EM+AAHG+ W LE +L WYLR NGK
Sbjct: 143 DDDDGAASFGGGVAVAFDSEDPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKET 202
Query: 239 HALIVAAFVDLLV 251
HA IVAAFVDL+V
Sbjct: 203 HAAIVAAFVDLVV 215
>Os04g0685000 Protein of unknown function DUF623, plant domain containing protein
Length = 246
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 199 DPYSDFRSSMEEMVAAH---GLRRWDALEELLVWYLRVNGKHNHALIVAAFVDLLV 251
DPY DFR SMEEMV +H G W LEE+L WYLR NGK H IV AFVDL+V
Sbjct: 164 DPYGDFRRSMEEMVMSHMSGGGHDWGWLEEMLGWYLRANGKKTHGFIVGAFVDLVV 219
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,607,838
Number of extensions: 286670
Number of successful extensions: 795
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 9
Length of query: 341
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 239
Effective length of database: 11,709,973
Effective search space: 2798683547
Effective search space used: 2798683547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)