BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0863800 Os01g0863800|Os01g0863800
         (244 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04820.1  | chr5:1399685-1400467 FORWARD LENGTH=261             92   2e-19
AT2G36050.1  | chr2:15135852-15136637 REVERSE LENGTH=262           78   4e-15
AT3G52540.1  | chr3:19488716-19489564 REVERSE LENGTH=283           70   1e-12
AT2G18500.1  | chr2:8027102-8028049 FORWARD LENGTH=316             51   5e-07

>AT5G04820.1 | chr5:1399685-1400467 FORWARD LENGTH=261
          Length = 260

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 86/191 (45%), Gaps = 47/191 (24%)

Query: 36  PSCKNPRTQSFRAATAPPPPPGSRTIASIFLD---------------SAESSFTTSSARH 80
           P C N +T SFR           +T+ S+F D               + ES FT SS   
Sbjct: 23  PLCYNAKTLSFRVGDDMI-----KTVNSVFFDHHHNNNNGGDLLEAETPESWFTNSSETA 77

Query: 81  DCSDSLXXXXXXXXXXXXXXXXXXXIVRGLRSSDRLLFDPGASATSSILEE-----KSSD 135
             S                      +VRG+  S+RL FDPG   TSSILEE     KS  
Sbjct: 78  SHS--------TESDQDLDAESLEMVVRGVVRSERLFFDPGV--TSSILEEIEEKSKSDL 127

Query: 136 AAGEASFIG----------GVAVAFESEDPYVDFRVSMEEMVVAHG--VGNWGWLEEMLG 183
            + E   +G           VAVA ESEDPY DFR SMEEMV +HG    +W  LE ML 
Sbjct: 128 KSKETVAVGEDRSTPIEEISVAVAMESEDPYGDFRRSMEEMVTSHGELAKDWESLESMLA 187

Query: 184 WYLRANGKDTH 194
           WYLR NG+ +H
Sbjct: 188 WYLRMNGRKSH 198



>AT2G36050.1 | chr2:15135852-15136637 REVERSE LENGTH=262
          Length = 261

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 106 IVRGLRSSDRLLFDPGASATSSILEEKSSDAAGEASFIGGVAVAFESEDPYVDFRVSMEE 165
           +++GLRSS+RL+F+     T+SILEE +S    E    G +  + ES+DPY DF+ SMEE
Sbjct: 71  VIKGLRSSERLIFE-SKGETNSILEEATSKREEEDEEEGFMLFSLESDDPYSDFKRSMEE 129

Query: 166 MVVAHGV-GNWGWLEEMLGWYLRANGKDTH 194
           MV AH +  +W  LE++L  +L+ N K +H
Sbjct: 130 MVEAHALHHDWKSLEKLLLQFLKVNAKTSH 159



>AT3G52540.1 | chr3:19488716-19489564 REVERSE LENGTH=283
          Length = 282

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 2/90 (2%)

Query: 106 IVRGLRSSDRLLFDPGASATSSILEEKSSDAAGEASFIGGVAVAFESEDPYVDFRVSMEE 165
           +++GL+SS RL+F+   + ++SILEE +     E    G + ++ ES DPY DF+ SME+
Sbjct: 98  VIKGLKSSKRLIFERRGT-SNSILEEATKRDDHEEEEDGLMLLSLESNDPYTDFKNSMEK 156

Query: 166 MVVAHGV-GNWGWLEEMLGWYLRANGKDTH 194
           MV  H +  +W  LE++L W+L+ N K +H
Sbjct: 157 MVEVHVLHHDWISLEKLLFWFLKVNVKASH 186



>AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316
          Length = 315

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 140 ASFIGGVAVAFESEDPYVDFRVSMEEMVVAHGVGNWGWLEEMLGWYLRANGKDTH 194
           A  + GVAV  +SEDPY DF+ SM EM+V   +     LE++L  +L  N K  H
Sbjct: 222 AVMVEGVAVVKKSEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHH 276



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,649,366
Number of extensions: 113676
Number of successful extensions: 737
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 4
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)