BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0146500 Os12g0146500|AK107470
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0146500 Protein of unknown function DUF668 family protein 476 e-134
Os04g0169500 Protein of unknown function DUF668 family protein 125 4e-29
Os03g0858600 Protein of unknown function DUF668 family protein 113 1e-25
Os01g0845000 Protein of unknown function DUF668 family protein 81 7e-16
Os03g0270500 Protein of unknown function DUF668 family protein 76 2e-14
Os05g0457600 71 7e-13
>Os12g0146500 Protein of unknown function DUF668 family protein
Length = 261
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/261 (88%), Positives = 232/261 (88%)
Query: 1 MAGKHLIGCMVSGSRSPDSERWKIHGDGDLPLSFSYYVSASNDDYSSINSPFQGDHTNSN 60
MAGKHLIGCMVSGSRSPDSERWKIHGDGDLPLSFSYYVSASNDDYSSINSPFQGDHTNSN
Sbjct: 1 MAGKHLIGCMVSGSRSPDSERWKIHGDGDLPLSFSYYVSASNDDYSSINSPFQGDHTNSN 60
Query: 61 LSIVFESSSHNWVMNXXXXXXXXXXXXXXXXXXXIIFIEKLAVAPRHICPDERDALYNML 120
LSIVFESSSHNWVMN IIFIEKLAVAPRHICPDERDALYNML
Sbjct: 61 LSIVFESSSHNWVMNAPAVTTLGAAALALHYANLIIFIEKLAVAPRHICPDERDALYNML 120
Query: 121 TDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAMAAEWSGTVQRILGWLAPLAHNMLRWQ 180
TDRIRASLRARLRPIAKNM CDPAMAAEWSGTVQRILGWLAPLAHNMLRWQ
Sbjct: 121 TDRIRASLRARLRPIAKNMAASSSSSSSACDPAMAAEWSGTVQRILGWLAPLAHNMLRWQ 180
Query: 181 SERNFEQRNVASSGTGVLLLQTLHFADQKKSEAAIVELLVGLNYLWKAGRELDAKAKKLV 240
SERNFEQRNVASSGTGVLLLQTLHFADQKKSEAAIVELLVGLNYLWKAGRELDAKAKKLV
Sbjct: 181 SERNFEQRNVASSGTGVLLLQTLHFADQKKSEAAIVELLVGLNYLWKAGRELDAKAKKLV 240
Query: 241 SGGGKRDEFTDYYSSNRMECR 261
SGGGKRDEFTDYYSSNRMECR
Sbjct: 241 SGGGKRDEFTDYYSSNRMECR 261
>Os04g0169500 Protein of unknown function DUF668 family protein
Length = 514
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 9/140 (6%)
Query: 95 IIFIEKLAVAPRHICPDERDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAM 154
+I IEKL P + + RD LY ML +RA+LR L+ K+M D +
Sbjct: 365 VIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAIY--------DAFL 416
Query: 155 AAEWSGTVQRILGWLAPLAHNMLRWQSERNFEQRNVASSGTGVLLLQTLHFADQKKSEAA 214
A +W T+++ L WLAP+AHNM+RWQ+ERNFEQ+ + G VLLLQTL+FAD++K+EA
Sbjct: 417 AHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGN-VLLLQTLYFADREKTEAV 475
Query: 215 IVELLVGLNYLWKAGRELDA 234
I ELLVGLNY+ + ++ +A
Sbjct: 476 ICELLVGLNYICRYEQQQNA 495
>Os03g0858600 Protein of unknown function DUF668 family protein
Length = 475
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 83/140 (59%), Gaps = 13/140 (9%)
Query: 95 IIFIEKLAVAPRHICPDERDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAM 154
II IE++A +PR + +ERD LY MLT +RA LRARL +P +
Sbjct: 333 IISIERMARSPRLVGAEERDELYGMLTASVRAQLRARL-----------SGTVAAAEPGL 381
Query: 155 AAEWSGTVQRILGWLAPLAHNMLRWQSERNFEQ--RNVASSGTGVLLLQTLHFADQKKSE 212
A +W V IL WLAP+AH +RWQ+ER+ EQ + T L++QTL A++ K E
Sbjct: 382 AGQWRAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTREMETQTLVVQTLQMAERGKVE 441
Query: 213 AAIVELLVGLNYLWKAGREL 232
AA+ ELLVGLNYL + +E+
Sbjct: 442 AAVAELLVGLNYLCRFHKEI 461
>Os01g0845000 Protein of unknown function DUF668 family protein
Length = 300
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 8/112 (7%)
Query: 112 ERDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAMAAEWSGTVQRILGWLAP 171
ER +Y ML ++RA++R++LR ++ D +A W V RI+ WL P
Sbjct: 181 ERAEMYEMLPAKLRAAVRSKLRDWWRD--------PGPLDAGLAQGWKDAVDRIMAWLGP 232
Query: 172 LAHNMLRWQSERNFEQRNVASSGTGVLLLQTLHFADQKKSEAAIVELLVGLN 223
+A + ++WQ+ERN ++ G V LQTL +AD++K+EAA+VE+LV L+
Sbjct: 233 MARDTVQWQAERNMDRTRRFDGGARVYALQTLRWADKEKAEAALVEVLVALS 284
>Os03g0270500 Protein of unknown function DUF668 family protein
Length = 286
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 112 ERDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAMAAEWSGTVQRILGWLAP 171
+RD LY ML IR +++A+LR + D V R+L WL P
Sbjct: 165 KRDELYKMLPVTIRTAVKAKLRESWRGQPVDEAAAAASMD---------AVDRMLRWLGP 215
Query: 172 LAHNMLRWQSERNFEQRNVASSGTGVLLLQTLHFADQKKSEAAIVELLVGLN 223
+AH+ +RW E + E+ S VL++QTLHFAD+ K+E IVE+L+GL+
Sbjct: 216 MAHDTVRWHDEHSMERAQRFSMRPRVLMVQTLHFADRHKAENVIVEVLIGLS 267
>Os05g0457600
Length = 501
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 111 DERDALYNMLTDRIRASLRARLRPIAKNMXXXXXXXXXXCDPAMAAEWSGTVQRILGWLA 170
+ R LY ML ++RA++RA+LR + D +A W RIL WLA
Sbjct: 368 EARAELYAMLPSKLRAAVRAKLRGWWRE-RGAAAAVAVELDAGLAEGWRSAAGRILAWLA 426
Query: 171 PLAHNMLRWQSERN------FEQRNVASSGTGVLLLQTLHFADQKKSEAAIVELLVGLN 223
P+A + RW +ER+ FE LQTL +AD +K+EAA+VE+LV L+
Sbjct: 427 PMARDTARWHAERSLDRQRRFEVGGGGGGSARAWALQTLRWADAEKAEAAVVEVLVALS 485
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,433,756
Number of extensions: 302433
Number of successful extensions: 581
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 573
Number of HSP's successfully gapped: 6
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)