BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0132600 Os12g0132600|Os12g0132600
(209 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0132600 430 e-121
Os02g0506800 134 4e-32
Os12g0434700 121 4e-28
Os11g0559800 120 6e-28
Os06g0243700 119 2e-27
Os06g0596500 116 1e-26
Os03g0835200 Retrotransposon gag protein family protein 115 2e-26
Os01g0123000 Similar to Retrofit 114 7e-26
Os04g0517700 110 5e-25
Os10g0204225 110 5e-25
Os05g0527300 Retrotransposon gag protein family protein 106 1e-23
Os05g0317500 94 9e-20
Os09g0462500 86 1e-17
Os04g0126401 86 2e-17
Os10g0331000 70 1e-12
>Os12g0132600
Length = 209
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MASSSTAAAPAILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQ 60
MASSSTAAAPAILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQ
Sbjct: 1 MASSSTAAAPAILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQ 60
Query: 61 DKDGNTGEKVVNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPSIGGKPMDDEELVT 120
DKDGNTGEKVVNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPSIGGKPMDDEELVT
Sbjct: 61 DKDGNTGEKVVNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPSIGGKPMDDEELVT 120
Query: 121 YILAGLDFDYNSVVSSVANRAEPISVSELHAQLTGNGCKQSSFYAAWLRRAWCSPRGWFC 180
YILAGLDFDYNSVVSSVANRAEPISVSELHAQLTGNGCKQSSFYAAWLRRAWCSPRGWFC
Sbjct: 121 YILAGLDFDYNSVVSSVANRAEPISVSELHAQLTGNGCKQSSFYAAWLRRAWCSPRGWFC 180
Query: 181 APVTSAQRAVCYLSVADAGLGAGFHHASA 209
APVTSAQRAVCYLSVADAGLGAGFHHASA
Sbjct: 181 APVTSAQRAVCYLSVADAGLGAGFHHASA 209
>Os02g0506800
Length = 280
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 113/193 (58%), Gaps = 55/193 (28%)
Query: 13 LGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPS-KMVVLQDKDGNTGEKVV 71
L Q VTEKL+++NF LW+AQVLA LRGAQ+AGFLD + + PS M+V +D+ T VV
Sbjct: 14 LSQPVTEKLSRSNFSLWRAQVLATLRGAQMAGFLDGTKEKPSPTMIVKKDEKDVT---VV 70
Query: 72 NAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPSIG---------------------- 109
N A+ +WVAQEQQVLSYLL+SLSREVL+QV ++ + G
Sbjct: 71 NPAHAEWVAQEQQVLSYLLLSLSREVLSQVVAVSTAAGVWEAIEGMFMSQSRARAINTRM 130
Query: 110 -----------------------------GKPMDDEELVTYILAGLDFDYNSVVSSVANR 140
GK +DDE+LV+YILAG DFDY+ VVS+VA R
Sbjct: 131 ALATTQKGNLSVINYVNKMRGLADEMTAAGKKLDDEDLVSYILAGHDFDYDPVVSAVAAR 190
Query: 141 AEPISVSELHAQL 153
EPISVSEL QL
Sbjct: 191 VEPISVSELITQL 203
>Os12g0434700
Length = 216
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 108/209 (51%), Gaps = 61/209 (29%)
Query: 1 MASSST--AAAPAILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVV 58
MASSS A+P+ GQ V EKL + NF+LWK QVL A+R AQ+ G+LD + PP++++
Sbjct: 1 MASSSVMATASPSPFGQPVEEKLGRNNFLLWKTQVLPAVRDAQMMGYLDGTTAPPARLI- 59
Query: 59 LQDKDGNTGEKVV---NAAYTQWVAQEQQVLSYLLMSLSREVLTQVAT------------ 103
D GEKVV N YT+WV +QQVLSYLL SL+RE+LTQV +
Sbjct: 60 ----DVKEGEKVVKATNLEYTKWVVADQQVLSYLLSSLTREILTQVVSIETAAELWRTLE 115
Query: 104 -----------------LTPSIGG-----------KPMDDE-----------ELVTYILA 124
+T + G K DE E+V YILA
Sbjct: 116 NMLCSQTRAQSFNTRVAMTTTRKGNLKITYYINRMKSFSDEMAAAGKPMDDEEIVAYILA 175
Query: 125 GLDFDYNSVVSSVANRAEPISVSELHAQL 153
GLD +Y+ VVS + R E +++++ + QL
Sbjct: 176 GLDEEYDPVVSVITGRTEAVTIADAYTQL 204
>Os11g0559800
Length = 318
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 96/181 (53%), Gaps = 54/181 (29%)
Query: 13 LGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQDKDGNTGEKVV- 71
LG VT KLT+ N+VLW+AQVL ALRGA L +LD++ + P+K DK N E V
Sbjct: 14 LGPPVTVKLTRENYVLWRAQVLPALRGALLTNYLDSTAEEPAKTRTTVDK--NDKEIVSN 71
Query: 72 NAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPSI----------------------- 108
N+ Y W+AQ+QQVL+YLL SLS++VL QVATL S
Sbjct: 72 NSEYAMWMAQDQQVLAYLLNSLSKDVLQQVATLNTSAEVWAAITNMYTSQSRARITNLRI 131
Query: 109 ----------------------------GGKPMDDEELVTYILAGLDFDYNSVVSSVANR 140
GKP+DD+ELV+YILAGLD DYN +VS+V +R
Sbjct: 132 SLTNSKKGSTTTAAYFSKMKGLADDLASAGKPIDDDELVSYILAGLDIDYNPLVSTVEHR 191
Query: 141 A 141
+
Sbjct: 192 S 192
>Os06g0243700
Length = 289
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 110/196 (56%), Gaps = 54/196 (27%)
Query: 11 AILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQDKDGN--TGE 68
A+LG V+EKL++ NF++W+AQVL A+RGAQL G+LD + + PS + ++ K G+ E
Sbjct: 13 AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
Query: 69 KVVNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPS--------------------- 107
V N AY+QW+A +QQVL YLL +LSREVL QVA L +
Sbjct: 73 SVNNPAYSQWIAHDQQVLGYLLSTLSREVLVQVAHLESARQVWTAINEMFSSQSKTRIIQ 132
Query: 108 --------IGG-----------KPMDDE-----------ELVTYILAGLDFDYNSVVSSV 137
+ G K + DE ++V+YIL GLD DYN +V+SV
Sbjct: 133 IRAQLARELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASV 192
Query: 138 ANRAEPISVSELHAQL 153
+++ + IS+S+L+AQL
Sbjct: 193 SSK-DYISLSDLYAQL 207
>Os06g0596500
Length = 289
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 109/196 (55%), Gaps = 54/196 (27%)
Query: 11 AILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQDKDGN--TGE 68
A+LG V+EKL++ F++W+AQVL A+RGAQL G+LD + + PS + ++ K G+ E
Sbjct: 13 AVLGHPVSEKLSRDKFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
Query: 69 KVVNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPS--------------------- 107
V N AY+QW+A +QQVL YLL +LSREVL QVA L +
Sbjct: 73 SVNNPAYSQWIAHDQQVLGYLLSTLSREVLVQVAHLESARQVWTAINEMFSSQSKARIIQ 132
Query: 108 --------IGG-----------KPMDDE-----------ELVTYILAGLDFDYNSVVSSV 137
+ G K + DE ++V+YIL GLD DYN +V+SV
Sbjct: 133 IRAQLARELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASV 192
Query: 138 ANRAEPISVSELHAQL 153
+++ + IS+S+L+AQL
Sbjct: 193 SSK-DYISLSDLYAQL 207
>Os03g0835200 Retrotransposon gag protein family protein
Length = 270
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 109/214 (50%), Gaps = 58/214 (27%)
Query: 12 ILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQDKDGNTGEKVV 71
+ G V+EKLTK N+ LW AQVLAA+RGA+L G + + PS M + + T EK+V
Sbjct: 14 LFGVQVSEKLTKGNYALWSAQVLAAIRGARLDGHITGATAAPS-MEIEKTASDKTTEKIV 72
Query: 72 NAAYTQWVAQEQQVLSYLLMSLSREVLTQVA----------------------------- 102
N AY +W A +QQVL +LL +LSR++LTQVA
Sbjct: 73 NPAYQEWFASDQQVLGFLLSTLSRDILTQVATASTAAQAWQQVCAMFTAQTKARSLNVRL 132
Query: 103 TLTPSIGG----------------------KPMDDEELVTYILAGLDFDYNSVVSSVANR 140
TLT + G KP+D+E+LV Y+L GLD D+ VVS++ R
Sbjct: 133 TLTNTQKGNMSISEYCGKMKALADEIASSGKPLDEEDLVAYVLNGLDDDFEPVVSAIVAR 192
Query: 141 AEPISVSELHAQLTGNGCKQSSFYAAWLRRAWCS 174
E +++E+++QL +Q+ LR+A S
Sbjct: 193 NESTTMAEVYSQLLNFENRQA------LRQAHAS 220
>Os01g0123000 Similar to Retrofit
Length = 360
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 99/201 (49%), Gaps = 54/201 (26%)
Query: 7 AAAPAILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQDKDGNT 66
AA ++G V+EKLTK N+ LW AQVL ALRGA+L GF+ PP + ++ D
Sbjct: 9 AATNPLVGIQVSEKLTKQNYALWSAQVLTALRGARLEGFISGKTTPPPAEIEKKEGDKKE 68
Query: 67 GEKVV---NAAYTQWVAQEQQVLSYLLMSLSREVLTQVA--------------------- 102
GEK + N A +W A +QQVL +L SLSRE+L+QVA
Sbjct: 69 GEKTIKIANPAVDEWFATDQQVLGFLFSSLSREILSQVAGATTAAQAWQAISDMFASKSR 128
Query: 103 --------TLTPSIGG----------------------KPMDDEELVTYILAGLDFDYNS 132
LT + G KP+D ++L+ YI+ GLD +++
Sbjct: 129 AGLINMRLALTSTQKGTMSVTEYVAKMRAIADELAAAGKPIDQDDLIAYIINGLDANFDP 188
Query: 133 VVSSVANRAEPISVSELHAQL 153
VV ++ R EPI+V E+++ L
Sbjct: 189 VVEALVARVEPITVQEMYSHL 209
>Os04g0517700
Length = 232
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 94/144 (65%), Gaps = 14/144 (9%)
Query: 11 AILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQDKDGN--TGE 68
A+LG V+EKL++ NF++W+AQVL A+RGAQL G+LD + + PS + ++ K G+ E
Sbjct: 13 AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
Query: 69 KVVNAAYTQWVAQEQQV-LSYLLMSLSREV---------LTQVATLTPSI--GGKPMDDE 116
V N AY+QW+A +QQ + + L+RE+ T++ L + GK +DD+
Sbjct: 73 SVNNPAYSQWIAHDQQARIIQIRAQLARELKGDSSAAAYFTKMKGLADEMAAAGKKLDDD 132
Query: 117 ELVTYILAGLDFDYNSVVSSVANR 140
++V+YIL GLD DYN +V+SV+++
Sbjct: 133 DIVSYILGGLDADYNPLVASVSSK 156
>Os10g0204225
Length = 150
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 77/109 (70%), Gaps = 10/109 (9%)
Query: 1 MASSST--AAAPAILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVV 58
MASSS A+P++ GQ V EKL + NF+LWK QVL A+RGAQ+ G+LD + PP++++
Sbjct: 1 MASSSVMATASPSLFGQPVAEKLGRNNFLLWKTQVLPAVRGAQMMGYLDGTTVPPARLI- 59
Query: 59 LQDKDGNTGEKVV---NAAYTQWVAQEQQVLSYLLMSLSREVLTQVATL 104
D GEKVV N YT+WV +QQVLSYLL SL+RE+LTQV ++
Sbjct: 60 ----DVKEGEKVVKATNPEYTKWVVADQQVLSYLLSSLAREILTQVVSI 104
>Os05g0527300 Retrotransposon gag protein family protein
Length = 363
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 108/208 (51%), Gaps = 58/208 (27%)
Query: 1 MASSS-TAAAPAILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVL 59
MASSS TAA + G ++EKL+K+N LWKAQV+AA+RGA+L G L + K P+ ++
Sbjct: 1 MASSSKTAAGNPLGGNAISEKLSKSNHALWKAQVMAAVRGARLEGHLTGATKTPNALITT 60
Query: 60 QDKDGNTGEK---VVNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATL------------ 104
G+ GEK V N + WVA +QQVL +LL +L+R+VL QVAT
Sbjct: 61 T--AGDKGEKEVTVRNPEFDDWVATDQQVLGFLLSTLARDVLAQVATCGTAAAAWQMLEE 118
Query: 105 -----------------------TPSIG----------------GKPMDDEELVTYILAG 125
T SI GK +DD++L++YI+AG
Sbjct: 119 MYSSVTRARFINTRIALSNTKKGTLSINEYVSKMKALADEMTAAGKIVDDDDLISYIIAG 178
Query: 126 LDFDYNSVVSSVANRAEPISVSELHAQL 153
LD Y V+S++ + + +++ E ++QL
Sbjct: 179 LDDTYEPVISTIVGK-DTMTLGEAYSQL 205
>Os05g0317500
Length = 135
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 7/112 (6%)
Query: 1 MASSSTAAAPA-ILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNS--IKPPSKMV 57
MASSS+ AP+ L Q VTEKL + NF LW+AQVLA LRGAQ+AGF D + + P+K+V
Sbjct: 1 MASSSSTIAPSPALSQPVTEKLARGNFSLWRAQVLATLRGAQMAGFFDGTKEMPAPTKIV 60
Query: 58 VLQDKDGNTGEKVVNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPSIG 109
+KD V N YT+WVAQEQQVLSYLL+SLSRE+L+QV + + G
Sbjct: 61 KKDEKDI----VVPNPDYTEWVAQEQQVLSYLLLSLSREILSQVVHMNTAAG 108
>Os09g0462500
Length = 107
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 1 MASSSTAAAPAILGQV-VTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVL 59
MASSS+ A+ V V EKL K N++LWKAQVL +RGAQ+ G+LD + + P K +
Sbjct: 1 MASSSSTPVGALPFVVPVIEKLGKGNYLLWKAQVLPTIRGAQMFGYLDGTAEVPVKEI-- 58
Query: 60 QDKDGNTGEKVVNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATL 104
+ K+G+ K VN+ +T+WV ++QQVL YL+ +L+R+VL + L
Sbjct: 59 KVKEGDKVIKKVNSDFTRWVTEDQQVLDYLMATLTRDVLMLLIIL 103
>Os04g0126401
Length = 165
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 13 LGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNS--IKPPSKMVVLQDKDGNTGEKV 70
L Q VTEKL + NF LW+AQVLA LRGAQ+AGF+D + + P+K+V +KD V
Sbjct: 14 LSQPVTEKLARGNFSLWRAQVLATLRGAQMAGFVDGTKEMPAPTKIVKKDEKD----IVV 69
Query: 71 VNAAYTQWVAQEQQVLSYLLMSLSREVLTQVATLTPSIG 109
N YT+WVAQEQQVLSYLL+SLSRE+L+QV + + G
Sbjct: 70 PNPDYTEWVAQEQQVLSYLLLSLSREILSQVVHMNTAAG 108
>Os10g0331000
Length = 183
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 57/179 (31%)
Query: 2 ASSSTAAAPAILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMV--VL 59
+SSSTA + + G V+EKL+K N LW+AQVL +RGA+L G + P+ + +
Sbjct: 3 SSSSTAVSNPLFGVQVSEKLSKQNHALWRAQVLTVIRGARLEGHITGETAVPAAQLSKTV 62
Query: 60 QDKDGNTGEKVVNAAYTQWVAQEQQVLSYLLMSLSREVL--------------------- 98
+ K+ K N A+ +W+A +QQ L +L S++RE L
Sbjct: 63 EGKE----VKFSNPAHDEWIAADQQFLGFLFSSMTRETLAQVATAATAAEAWKTIQRMFT 118
Query: 99 ---------TQVATLTPSIG---------------------GKPMDDEELVTYILAGLD 127
++A +T G GK MD +EL+ YIL GLD
Sbjct: 119 AKTHAQTMNVRLALITMKKGNLSVSDYVGKMKLFADEIATVGKSMDSDELIAYILNGLD 177
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.128 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,986,141
Number of extensions: 257770
Number of successful extensions: 825
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 16
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)