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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0527300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Retrotransposon gag protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0239) R2 : 0.00475
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0742 (0.0503) R2dN8 : 0.00613 R2N8 : 0.00475
σ : 0.45
deviance : 92.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.33 0.443 -5950 36400 0.046 -1740000 -0.183 10600000 0.0696 7.11 995 10 -- --
89.85 0.445 2.9 -0.0779 0.0464 1.58 -0.183 -- 0.0699 7.13 995 10 -- --
90.41 0.443 -5950 36400 0.0474 -1740000 -- 10600000 0.0702 6.57 995 10 -- --
89.61 0.444 2.9 -0.0801 0.0435 1.77 -- -- 0.0695 6.45 994.8 10 -- --
90.53 0.443 -5950 36400 -- -1740000 -- 10600000 0.071 -- 995 10 -- --
92.58 0.451 2.9 -0.0653 0.0304 -- -0.234 -- 0.0654 7.22 -- -- -- --
92.72 0.451 2.9 -0.0702 0.0299 -- -- -- 0.066 7.52 -- -- -- --
89.7 0.443 2.9 -0.0789 -- 1.75 -- -- 0.0703 -- 994.8 13 -- --
89.78 0.444 2.9 -- 0.0423 1.76 -- -- 0.0784 6.56 994.8 10 -- --
92.77 0.45 2.9 -0.0697 -- -- -- -- 0.0664 -- -- -- -- --
92.85 0.451 2.9 -- 0.0293 -- -- -- 0.0738 7.69 -- -- -- --
89.87 0.443 2.9 -- -- 1.74 -- -- 0.0791 -- 994.8 14 -- --
92.9 0.45 2.9 -- -- -- -- -- 0.0742 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.30 humidity 80 30 < th dose independent rect. 1 3
5 79.30 humidity 80 30 < th dose dependent rect. 1 3
7 79.31 humidity 80 30 < th dose independent rect. 1 1
13 79.31 humidity 80 30 < th dose dependent rect. 1 1
45 85.79 humidity 80 1440 > th dose independent rect. 1 1
47 85.92 humidity 80 720 < th dose independent rect. 1 1
51 85.92 humidity 80 720 < th dose dependent rect. 1 1
58 86.18 atmosphere 1005 30 > th dose dependent rect. 1 1
62 86.54 temperature 20 90 < th dose independent rect. 1 1
94 88.09 humidity 70 720 > th dose independent rect. 2 7
95 88.12 atmosphere 1005 90 > th dose independent rect. 1 1
117 88.79 temperature 25 90 < th dose dependent rect. 24 1
120 88.82 temperature 25 10 < th dose dependent rect. 1 2
125 88.87 humidity 90 270 < th dose dependent rect. 22 11
126 88.89 wind 3 10 < th dose independent rect. 1 2
140 89.04 humidity 70 720 < th dose independent rect. 8 1
144 89.07 humidity 60 1440 > th dose independent rect. 7 2
145 89.08 humidity 60 1440 > th dose independent rect. 4 5
146 89.09 atmosphere 995 30 > th dose independent rect. 23 23
147 89.09 humidity 70 1440 < th dose dependent rect. 8 1
150 89.13 humidity 90 10 < th dose dependent rect. 22 5
151 89.13 humidity 90 10 < th dose dependent rect. 22 8
156 89.20 humidity 90 10 < th dose dependent rect. 20 10
193 89.27 wind 3 4320 > th dose independent rect. 1 1
195 89.28 humidity 60 1440 > th dose independent rect. 24 9
196 89.28 humidity 60 270 < th dose dependent rect. 9 1
211 89.29 humidity 90 10 < th dose dependent rect. 20 7
227 89.30 humidity 90 270 < th dose dependent sin 9 NA
239 89.36 radiation 10 10 < th dose independent rect. 3 22
255 89.38 humidity 60 90 < th dose dependent rect. 17 17
257 89.39 humidity 60 90 < th dose independent rect. 17 16
262 89.42 wind 3 4320 < th dose independent rect. 1 1
265 89.43 humidity 60 270 > th dose dependent rect. 21 12
268 89.45 wind 1 90 > th dose independent rect. 1 1
269 89.45 humidity 60 1440 > th dose independent rect. 22 11
308 89.50 atmosphere 995 10 > th dose independent sin 6 NA
332 89.53 humidity 60 30 > th dose independent rect. 3 8
333 89.53 radiation 40 30 < th dose independent rect. 3 8
350 89.54 radiation 40 30 > th dose dependent rect. 14 20
352 89.55 humidity 50 1440 < th dose independent rect. 13 1
357 89.55 radiation 40 30 > th dose dependent rect. 9 1
441 89.57 humidity 70 30 < th dose dependent rect. 9 1
450 89.58 wind 1 10 < th dose dependent rect. 7 3
454 89.59 atmosphere 995 10 < th dose independent sin 6 NA
456 89.59 wind 1 10 < th dose independent rect. 9 3
459 89.59 atmosphere 995 10 < th dose dependent sin 6 NA
503 89.59 atmosphere 995 30 < th dose dependent rect. 18 23
504 89.60 atmosphere 995 90 < th dose independent rect. 14 1
505 89.60 atmosphere 995 10 < th dose independent rect. 15 1
633 89.60 wind 1 10 < th dose dependent rect. 9 1
634 89.60 atmosphere 995 90 < th dose dependent rect. 14 1
635 89.60 atmosphere 995 10 < th dose dependent rect. 15 1
767 89.61 humidity 60 30 < th dose independent rect. 9 1
874 89.62 wind 3 90 < th dose independent rect. 1 1
955 89.63 humidity 90 10 < th dose dependent rect. 22 1
959 89.64 wind 1 10 < th dose independent rect. 9 1
986 89.65 wind 1 10 < th dose dependent rect. 7 9