Os03g0835200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Retrotransposon gag protein family protein.
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Os03g0835200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Retrotransposon gag protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 318.3 | 0.838 | 7.39 | 1.51 | 0.331 | 1.9 | 2.29 | -1.21 | 1.36 | 21.9 | 26.66 | 36 | -- | -- |
| 319.25 | 0.832 | 7.39 | 1.47 | 0.262 | 1.96 | 1.31 | -- | 1.32 | 20.9 | 26.27 | 22 | -- | -- |
| 324.33 | 0.839 | 7.4 | 1.46 | 0.273 | 1.94 | -- | 0.441 | 1.31 | 21.5 | 26.5 | 22 | -- | -- |
| 324.89 | 0.839 | 7.39 | 1.46 | 0.223 | 2.05 | -- | -- | 1.34 | 19.3 | 26.3 | 22 | -- | -- |
| 326.4 | 0.841 | 7.39 | 1.48 | -- | 2.08 | -- | 0.44 | 1.33 | -- | 25.73 | 20 | -- | -- |
| 391.36 | 0.927 | 7.45 | 1.43 | 1.99 | -- | 1.19 | -- | 1.24 | 23.7 | -- | -- | -- | -- |
| 397.43 | 0.934 | 7.45 | 1.39 | 1.99 | -- | -- | -- | 1.23 | 23.7 | -- | -- | -- | -- |
| 327.21 | 0.842 | 7.39 | 1.46 | -- | 2.08 | -- | -- | 1.32 | -- | 25.59 | 19 | -- | -- |
| 380.95 | 0.909 | 7.43 | -- | 0.241 | 1.97 | -- | -- | 1.17 | 20.6 | 26.09 | 22 | -- | -- |
| 646.22 | 1.19 | 7.4 | 1.44 | -- | -- | -- | -- | 1.26 | -- | -- | -- | -- | -- |
| 448.08 | 0.99 | 7.48 | -- | 2.01 | -- | -- | -- | 1.08 | 23.8 | -- | -- | -- | -- |
| 383.1 | 0.912 | 7.42 | -- | -- | 2.08 | -- | -- | 1.17 | -- | 25.42 | 22 | -- | -- |
| 701.21 | 1.24 | 7.44 | -- | -- | -- | -- | -- | 1.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 294.76 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 2 | 298.99 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 3 | 300.31 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 6 | 301.55 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 7 | 301.67 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 9 | 302.65 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 15 | 303.90 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 27 | 305.90 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 79 | 311.16 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 80 | 311.26 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 100 | 313.06 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 101 | 313.12 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 121 | 314.48 | wind | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 146 | 315.75 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 147 | 315.76 | wind | 1.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 165 | 316.59 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 235 | 319.21 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 244 | 319.33 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 255 | 319.55 | radiation | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 260 | 319.74 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 266 | 319.82 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 271 | 320.04 | wind | 1.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 273 | 320.10 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 18 |
| 277 | 320.18 | humidity | 80.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 289 | 320.30 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 296 | 320.46 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 302 | 320.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 16 | 21 |
| 375 | 321.80 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 389 | 322.08 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 21 |
| 406 | 322.46 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 423 | 322.73 | radiation | 20.0 | 30 | < th | dose independent | rect. | 6 | 14 |
| 434 | 322.93 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 450 | 323.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 451 | 323.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 452 | 323.17 | humidity | 60.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 461 | 323.27 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 14 |
| 513 | 324.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 14 |
| 522 | 324.11 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 524 | 324.15 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 12 |
| 536 | 324.27 | humidity | 90.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 547 | 324.39 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 566 | 324.58 | humidity | 80.0 | 10 | < th | dose independent | rect. | 4 | 14 |
| 568 | 324.60 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 591 | 324.79 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 594 | 324.79 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 608 | 324.95 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 613 | 324.97 | wind | 1.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 628 | 325.17 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 631 | 325.23 | wind | 1.0 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 639 | 325.28 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 645 | 325.34 | humidity | 80.0 | 10 | < th | dose independent | rect. | 2 | 16 |
| 646 | 325.34 | wind | 1.0 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 656 | 325.40 | wind | 1.0 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 669 | 325.54 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 674 | 325.61 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 677 | 325.64 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 703 | 325.88 | wind | 1.0 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 711 | 325.96 | humidity | 80.0 | 10 | > th | dose independent | sin | 0 | NA |
| 715 | 325.98 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 735 | 326.15 | radiation | 30.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 746 | 326.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 759 | 326.44 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 18 |
| 764 | 326.48 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 770 | 326.50 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 773 | 326.52 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 14 |
| 782 | 326.61 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 818 | 326.90 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 22 |
| 831 | 327.03 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 832 | 327.03 | humidity | 80.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 841 | 327.10 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 853 | 327.14 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 871 | 327.24 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 911 | 327.52 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 942 | 327.86 | wind | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 948 | 327.90 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 952 | 327.93 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 961 | 328.05 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 985 | 328.22 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 994 | 328.27 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 22 |