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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0517700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0242) R2 : 0.00203
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.049 (0.0509) R2dN8 : 0.00262 R2N8 : 0.00203
σ : 0.455
deviance : 95.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.31 0.439 3.38 0.206 0.285 0.196 -0.39 1.28 -0.0647 6.44 91 5896 -- --
89.38 0.44 3.38 0.124 0.312 0.273 -0.392 -- -0.109 6.33 98.03 4785 -- --
87.6 0.436 3.38 0.195 0.295 0.18 -- 1.3 -0.0604 6.59 88.67 6338 -- --
89.8 0.441 3.38 0.117 0.316 0.28 -- -- -0.109 6.45 120.7 4791 -- --
91.84 0.446 3.38 0.214 -- 0.189 -- 1.34 -0.0596 -- 91 5837 -- --
90.36 0.446 3.36 0.104 0.285 -- -0.411 -- -0.0445 6.37 -- -- -- --
90.77 0.446 3.36 0.0995 0.283 -- -- -- -0.043 6.5 -- -- -- --
94.09 0.452 3.38 0.125 -- 0.247 -- -- -0.0922 -- 153.9 5639 -- --
90.15 0.442 3.38 -- 0.314 0.271 -- -- -0.115 6.39 137.8 4785 -- --
94.93 0.455 3.37 0.107 -- -- -- -- -0.0372 -- -- -- -- --
91.04 0.446 3.36 -- 0.284 -- -- -- -0.0541 6.48 -- -- -- --
94.39 0.452 3.38 -- -- 0.261 -- -- -0.104 -- 141.4 4260 -- --
95.23 0.455 3.37 -- -- -- -- -- -0.049 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.08 humidity 80.0 10 < th dose independent rect. 6 2
3 78.22 radiation 1.0 43200 < th dose dependent rect. 3 1
4 78.46 radiation 10.0 30 > th dose independent rect. 7 1
7 78.66 radiation 1.0 4320 < th dose dependent rect. 3 1
8 78.71 humidity 80.0 10 < th dose independent rect. 23 9
10 78.73 atmosphere 1000.0 30 > th dose independent rect. 3 23
14 78.84 atmosphere 1005.0 90 > th dose dependent rect. 2 1
28 79.08 wind 9.0 1440 < th dose independent rect. 3 1
29 79.08 temperature 10.0 1440 > th dose independent rect. 3 1
32 79.08 temperature 30.0 1440 < th dose independent rect. 3 1
36 79.08 humidity 50.0 1440 > th dose independent rect. 3 1
45 79.08 atmosphere 995.0 1440 > th dose independent rect. 3 1
46 79.08 radiation 1.0 1440 < th dose independent rect. 3 1
66 79.08 temperature 10.0 1440 > th dose independent rect. 4 23
75 79.10 temperature 20.0 30 > th dose dependent rect. 2 1
77 79.13 atmosphere 1005.0 30 > th dose independent rect. 2 1
79 79.18 temperature 20.0 30 > th dose independent rect. 2 1
82 79.20 wind 3.0 30 < th dose independent rect. 2 1
85 79.23 wind 3.0 30 < th dose dependent rect. 2 1
92 79.29 humidity 60.0 30 > th dose dependent rect. 2 1
95 79.30 temperature 10.0 30 > th dose independent rect. 2 1
97 79.30 temperature 30.0 30 < th dose independent rect. 2 1
98 79.30 humidity 50.0 30 > th dose independent rect. 2 1
102 79.30 atmosphere 1010.0 30 < th dose independent rect. 2 1
104 79.30 radiation 1.0 30 < th dose independent rect. 2 1
109 79.30 precipitation 0.1 30 < th dose independent rect. 2 1
110 79.30 temperature 10.0 30 > th dose independent rect. 3 23
112 79.30 radiation 1.0 30 < th dose dependent rect. 2 1
117 79.30 precipitation 0.1 30 < th dose dependent rect. 2 1
128 79.54 atmosphere 1015.0 30 < th dose dependent rect. 2 1
131 79.61 temperature 30.0 30 < th dose dependent rect. 2 1
132 79.63 wind 1.0 30 > th dose independent rect. 2 1
197 80.33 precipitation 0.1 30 < th dose independent rect. 3 23
198 80.33 precipitation 0.1 30 < th dose dependent rect. 3 23
200 80.39 temperature 25.0 30 > th dose independent rect. 7 1
210 80.70 wind 9.0 30 < th dose independent rect. 3 23
214 80.83 radiation 10.0 10 > th dose independent rect. 16 16
229 82.00 humidity 50.0 30 > th dose independent rect. 3 23
265 83.06 atmosphere 1005.0 30 > th dose independent rect. 7 1
270 83.59 humidity 90.0 90 < th dose independent rect. 2 1
305 84.13 atmosphere 1000.0 30 > th dose independent rect. 8 23
307 84.19 temperature 30.0 30 < th dose independent rect. 3 23
310 84.30 atmosphere 995.0 720 > th dose independent rect. 23 16
313 84.39 wind 1.0 10 > th dose independent rect. 8 23
318 84.55 humidity 90.0 10 < th dose dependent rect. 7 1
319 84.56 wind 1.0 30 > th dose independent rect. 7 1
320 84.56 wind 5.0 30 < th dose independent rect. 7 1
322 84.62 temperature 25.0 270 > th dose independent rect. 23 4
329 84.69 precipitation 0.1 720 < th dose independent rect. 15 8
330 84.69 precipitation 0.1 720 < th dose dependent rect. 15 8
340 84.84 wind 7.0 10 < th dose dependent rect. 7 1
341 84.89 radiation 10.0 30 < th dose dependent rect. 3 23
344 84.90 temperature 20.0 10 > th dose dependent rect. 7 1
351 84.95 humidity 90.0 90 < th dose dependent rect. 1 7
352 84.96 atmosphere 995.0 30 > th dose dependent rect. 7 1
354 84.99 temperature 10.0 720 > th dose independent rect. 15 8
355 84.99 temperature 10.0 720 > th dose independent rect. 23 16
372 85.08 humidity 80.0 14400 < th dose dependent rect. 2 7
380 85.13 wind 9.0 30 < th dose independent rect. 8 23
382 85.15 radiation 10.0 30 < th dose independent rect. 3 23
384 85.16 wind 9.0 1440 < th dose independent rect. 8 1
387 85.16 temperature 10.0 30 > th dose independent rect. 7 1
389 85.16 temperature 10.0 1440 > th dose independent rect. 8 1
394 85.16 temperature 30.0 30 < th dose independent rect. 7 1
395 85.16 humidity 50.0 30 > th dose independent rect. 7 1
397 85.16 humidity 50.0 1440 > th dose independent rect. 8 1
399 85.16 atmosphere 995.0 30 > th dose independent rect. 7 1
400 85.16 atmosphere 995.0 1440 > th dose independent rect. 8 1
403 85.16 atmosphere 1015.0 30 < th dose independent rect. 7 1
404 85.16 atmosphere 1015.0 1440 < th dose independent rect. 8 1
406 85.16 temperature 10.0 30 > th dose independent rect. 8 23
407 85.16 temperature 10.0 1440 > th dose independent rect. 9 23
427 85.20 radiation 20.0 10 < th dose independent rect. 7 1
428 85.20 precipitation 0.1 30 < th dose independent rect. 7 1
432 85.20 precipitation 0.1 30 < th dose dependent rect. 7 1
436 85.25 temperature 10.0 720 > th dose independent rect. 3 8
437 85.25 atmosphere 995.0 720 > th dose independent rect. 3 8
438 85.25 temperature 10.0 720 > th dose independent rect. 11 16
443 85.27 radiation 40.0 30 < th dose independent rect. 7 1
448 85.31 wind 3.0 30 < th dose dependent rect. 2 6
458 85.38 humidity 50.0 720 > th dose independent rect. 3 8
462 85.39 precipitation 0.1 720 < th dose independent rect. 11 16
463 85.39 precipitation 0.1 720 < th dose dependent rect. 11 16
474 85.47 wind 1.0 30 < th dose independent rect. 12 15
477 85.48 wind 9.0 720 < th dose independent rect. 3 8
482 85.51 precipitation 0.1 10 < th dose independent rect. 8 23
483 85.51 precipitation 0.1 10 < th dose dependent rect. 8 23
512 85.66 atmosphere 995.0 720 > th dose independent rect. 7 8
521 85.70 precipitation 0.1 720 < th dose independent rect. 3 8
524 85.70 precipitation 0.1 720 < th dose dependent rect. 3 8
544 85.83 atmosphere 1015.0 30 < th dose independent rect. 3 23
556 85.91 precipitation 0.1 720 < th dose independent rect. 19 8
558 85.91 precipitation 0.1 720 < th dose dependent rect. 19 8
564 85.93 wind 9.0 720 < th dose independent rect. 19 8
565 85.93 radiation 1.0 10 > th dose dependent rect. 7 1
569 85.94 atmosphere 1000.0 30 > th dose independent rect. 8 18
573 85.96 precipitation 0.1 720 < th dose independent rect. 23 16
574 85.96 precipitation 0.1 720 < th dose dependent rect. 23 16
576 85.98 wind 9.0 720 < th dose independent rect. 15 8
578 86.00 humidity 70.0 14400 > th dose independent rect. 8 1
588 86.05 humidity 80.0 10 < th dose independent rect. 20 12
597 86.10 radiation 10.0 10 > th dose independent sin 11 NA
598 86.10 precipitation 0.1 1440 < th dose independent rect. 8 1
599 86.10 precipitation 0.1 1440 < th dose dependent rect. 8 1
610 86.14 wind 3.0 30 < th dose dependent rect. 2 11
615 86.17 humidity 50.0 30 > th dose independent rect. 8 23
627 86.21 atmosphere 995.0 30 > th dose dependent rect. 3 23
628 86.22 humidity 70.0 14400 > th dose independent rect. 4 5
630 86.22 temperature 30.0 30 < th dose dependent rect. 7 1
645 86.25 humidity 70.0 14400 < th dose independent rect. 8 1
649 86.26 temperature 10.0 720 > th dose independent rect. 7 8
650 86.26 atmosphere 1015.0 720 < th dose independent rect. 7 8
651 86.26 temperature 10.0 720 > th dose independent rect. 15 16
652 86.26 wind 9.0 720 < th dose independent rect. 15 17
655 86.28 wind 1.0 10 < th dose independent rect. 6 21
656 86.29 radiation 40.0 30 < th dose dependent rect. 7 1
658 86.30 atmosphere 995.0 720 > th dose independent rect. 3 16
666 86.34 temperature 10.0 720 > th dose independent rect. 19 8
667 86.34 temperature 30.0 720 < th dose independent rect. 19 8
668 86.34 humidity 50.0 720 > th dose independent rect. 19 8
669 86.34 atmosphere 995.0 720 > th dose independent rect. 19 8
670 86.34 radiation 1.0 720 < th dose independent rect. 19 8
675 86.34 temperature 10.0 720 > th dose independent rect. 3 16
677 86.34 radiation 1.0 720 < th dose dependent rect. 19 8
685 86.35 temperature 20.0 30 > th dose dependent rect. 2 6
691 86.36 atmosphere 1015.0 30 < th dose dependent rect. 7 1
707 86.41 atmosphere 995.0 720 > th dose independent rect. 15 8
711 86.42 atmosphere 995.0 720 > th dose independent rect. 15 16
712 86.43 precipitation 0.1 720 < th dose independent rect. 7 8
714 86.43 wind 5.0 14400 < th dose dependent rect. 10 2
715 86.43 precipitation 0.1 720 < th dose dependent rect. 7 8
723 86.49 atmosphere 1015.0 720 < th dose independent rect. 3 8
725 86.50 precipitation 0.1 720 < th dose independent rect. 15 16
727 86.50 precipitation 0.1 720 < th dose dependent rect. 15 16
728 86.52 wind 5.0 14400 < th dose independent rect. 10 5
734 86.54 humidity 70.0 14400 < th dose independent rect. 6 3
746 86.55 atmosphere 1000.0 30 > th dose dependent rect. 2 6
765 86.60 wind 5.0 14400 > th dose independent rect. 10 5
770 86.61 wind 5.0 14400 < th dose independent rect. 11 1
785 86.61 wind 5.0 14400 < th dose independent rect. 9 8
797 86.63 wind 3.0 30 < th dose independent rect. 2 6
798 86.63 atmosphere 1005.0 30 > th dose independent rect. 2 6
799 86.63 wind 5.0 14400 > th dose independent rect. 9 8
817 86.64 humidity 90.0 90 < th dose independent rect. 1 20
833 86.67 temperature 25.0 90 < th dose independent rect. 6 3
856 86.70 atmosphere 1015.0 720 < th dose independent rect. 3 17
873 86.71 wind 1.0 14400 > th dose dependent rect. 11 1
885 86.72 wind 9.0 30 < th dose dependent rect. 3 23
903 86.76 humidity 50.0 14400 > th dose dependent rect. 8 1
907 86.77 humidity 50.0 30 > th dose dependent rect. 7 1
909 86.78 wind 3.0 14400 > th dose independent rect. 10 1
912 86.78 wind 9.0 4320 < th dose independent rect. 3 6
950 86.81 humidity 80.0 720 > th dose dependent rect. 3 1
959 86.83 radiation 40.0 720 < th dose independent rect. 15 17
965 86.84 radiation 40.0 720 < th dose independent rect. 15 8
990 86.89 atmosphere 1000.0 30 > th dose independent rect. 21 10
1000 86.90 humidity 90.0 720 < th dose independent rect. 24 4