BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0517700 Os04g0517700|Os04g0517700
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0517700 326 1e-89
Os06g0243700 254 4e-68
Os06g0596500 251 2e-67
Os02g0506800 129 1e-30
Os11g0559800 127 5e-30
Os12g0434700 111 5e-25
Os03g0835200 Retrotransposon gag protein family protein 104 4e-23
Os05g0527300 Retrotransposon gag protein family protein 103 7e-23
Os12g0132600 100 1e-21
Os04g0126401 94 8e-20
Os10g0190300 87 1e-17
Os10g0204225 84 8e-17
Os05g0317500 81 5e-16
Os09g0462500 76 2e-14
>Os04g0517700
Length = 232
Score = 326 bits (835), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 167/220 (75%), Positives = 167/220 (75%)
Query: 13 AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE
Sbjct: 13 AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
Query: 73 SVNNPAYSQWIAHDXXXXXXXXXXXXXXELKGDSSAAAYFTKMKGLADEMAAAGKKLDDD 132
SVNNPAYSQWIAHD ELKGDSSAAAYFTKMKGLADEMAAAGKKLDDD
Sbjct: 73 SVNNPAYSQWIAHDQQARIIQIRAQLARELKGDSSAAAYFTKMKGLADEMAAAGKKLDDD 132
Query: 133 DIVSYILGGLDADYNPLVASVSSKDYISLTRHXXXXXXXXXXXXXXXXXXXXXXXXXXXX 192
DIVSYILGGLDADYNPLVASVSSKDYISLTRH
Sbjct: 133 DIVSYILGGLDADYNPLVASVSSKDYISLTRHEEDVDEDKVEAVDEVVLAAISVVVLVAE 192
Query: 193 XXXXXXXXXXXDLPVNCVGRKVTQCIHAGSVLIDRSLETM 232
DLPVNCVGRKVTQCIHAGSVLIDRSLETM
Sbjct: 193 AVVAVAVEMVLDLPVNCVGRKVTQCIHAGSVLIDRSLETM 232
>Os06g0243700
Length = 289
Score = 254 bits (649), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/189 (71%), Positives = 136/189 (71%), Gaps = 39/189 (20%)
Query: 13 AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE
Sbjct: 13 AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
Query: 73 SVNNPAYSQWIAHDXX---------------------------------------XXXXX 93
SVNNPAYSQWIAHD
Sbjct: 73 SVNNPAYSQWIAHDQQVLGYLLSTLSREVLVQVAHLESARQVWTAINEMFSSQSKTRIIQ 132
Query: 94 XXXXXXXELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASV 153
ELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASV
Sbjct: 133 IRAQLARELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASV 192
Query: 154 SSKDYISLT 162
SSKDYISL+
Sbjct: 193 SSKDYISLS 201
>Os06g0596500
Length = 289
Score = 251 bits (642), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/189 (70%), Positives = 135/189 (71%), Gaps = 39/189 (20%)
Query: 13 AVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
AVLGHPVSEKLSRD FLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE
Sbjct: 13 AVLGHPVSEKLSRDKFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE 72
Query: 73 SVNNPAYSQWIAHDXX---------------------------------------XXXXX 93
SVNNPAYSQWIAHD
Sbjct: 73 SVNNPAYSQWIAHDQQVLGYLLSTLSREVLVQVAHLESARQVWTAINEMFSSQSKARIIQ 132
Query: 94 XXXXXXXELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASV 153
ELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASV
Sbjct: 133 IRAQLARELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASV 192
Query: 154 SSKDYISLT 162
SSKDYISL+
Sbjct: 193 SSKDYISLS 201
>Os02g0506800
Length = 280
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 97/181 (53%), Gaps = 43/181 (23%)
Query: 15 LGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKESV 74
L PV+EKLSR NF +WRAQVL +RGAQ+ G+LDGTKE PSP + V+K D +V
Sbjct: 14 LSQPVTEKLSRSNFSLWRAQVLATLRGAQMAGFLDGTKEKPSPTMIVKKDEKD----VTV 69
Query: 75 NNPAYSQWIAHDXXXXXXXXXXXXXXEL-------------------------------- 102
NPA+++W+A + L
Sbjct: 70 VNPAHAEWVAQEQQVLSYLLLSLSREVLSQVVAVSTAAGVWEAIEGMFMSQSRARAINTR 129
Query: 103 -------KGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASVSS 155
KG+ S Y KM+GLADEM AAGKKLDD+D+VSYIL G D DY+P+V++V++
Sbjct: 130 MALATTQKGNLSVINYVNKMRGLADEMTAAGKKLDDEDLVSYILAGHDFDYDPVVSAVAA 189
Query: 156 K 156
+
Sbjct: 190 R 190
>Os11g0559800
Length = 318
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 98/188 (52%), Gaps = 42/188 (22%)
Query: 15 LGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKESV 74
LG PV+ KL+R+N+++WRAQVLPA+RGA LT YLD T E P+ T K ++V
Sbjct: 14 LGPPVTVKLTRENYVLWRAQVLPALRGALLTNYLDSTAEEPAKTRTTVDKNDKEIVS--- 70
Query: 75 NNPAYSQWIAHDXXXXXXXXXXXXXXEL-------------------------------- 102
NN Y+ W+A D L
Sbjct: 71 NNSEYAMWMAQDQQVLAYLLNSLSKDVLQQVATLNTSAEVWAAITNMYTSQSRARITNLR 130
Query: 103 -------KGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASVSS 155
KG ++ AAYF+KMKGLAD++A+AGK +DDD++VSYIL GLD DYNPLV++V
Sbjct: 131 ISLTNSKKGSTTTAAYFSKMKGLADDLASAGKPIDDDELVSYILAGLDIDYNPLVSTVEH 190
Query: 156 KDYISLTR 163
+ + R
Sbjct: 191 RSLAKIRR 198
>Os12g0434700
Length = 216
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 89/181 (49%), Gaps = 43/181 (23%)
Query: 15 LGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKESV 74
G PV EKL R+NFL+W+ QVLPAVR AQ+ GYLDGT P+ I V K G+ +VK +
Sbjct: 15 FGQPVEEKLGRNNFLLWKTQVLPAVRDAQMMGYLDGTTAPPARLIDV--KEGEKVVKAT- 71
Query: 75 NNPAYSQWIAHDXXXXXXXXXXXXXXEL-------------------------------- 102
N Y++W+ D L
Sbjct: 72 -NLEYTKWVVADQQVLSYLLSSLTREILTQVVSIETAAELWRTLENMLCSQTRAQSFNTR 130
Query: 103 -------KGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASVSS 155
KG+ Y +MK +DEMAAAGK +DD++IV+YIL GLD +Y+P+V+ ++
Sbjct: 131 VAMTTTRKGNLKITYYINRMKSFSDEMAAAGKPMDDEEIVAYILAGLDEEYDPVVSVITG 190
Query: 156 K 156
+
Sbjct: 191 R 191
>Os03g0835200 Retrotransposon gag protein family protein
Length = 270
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 42/183 (22%)
Query: 14 VLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKES 73
+ G VSEKL++ N+ +W AQVL A+RGA+L G++ G PS EI +K D E
Sbjct: 14 LFGVQVSEKLTKGNYALWSAQVLAAIRGARLDGHITGATAAPSMEI---EKTASDKTTEK 70
Query: 74 VNNPAYSQWIAHDXXXXXXXXXXXXXXEL------------------------------- 102
+ NPAY +W A D L
Sbjct: 71 IVNPAYQEWFASDQQVLGFLLSTLSRDILTQVATASTAAQAWQQVCAMFTAQTKARSLNV 130
Query: 103 --------KGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASVS 154
KG+ S + Y KMK LADE+A++GK LD++D+V+Y+L GLD D+ P+V+++
Sbjct: 131 RLTLTNTQKGNMSISEYCGKMKALADEIASSGKPLDEEDLVAYVLNGLDDDFEPVVSAIV 190
Query: 155 SKD 157
+++
Sbjct: 191 ARN 193
>Os05g0527300 Retrotransposon gag protein family protein
Length = 363
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 90/186 (48%), Gaps = 42/186 (22%)
Query: 16 GHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKE-SV 74
G+ +SEKLS+ N +W+AQV+ AVRGA+L G+L G + P+ IT GD KE +V
Sbjct: 15 GNAISEKLSKSNHALWKAQVMAAVRGARLEGHLTGATKTPNALITT--TAGDKGEKEVTV 72
Query: 75 NNPAYSQWIAHDXXXXXXXXXXXXXXEL-------------------------------- 102
NP + W+A D L
Sbjct: 73 RNPEFDDWVATDQQVLGFLLSTLARDVLAQVATCGTAAAAWQMLEEMYSSVTRARFINTR 132
Query: 103 -------KGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIVSYILGGLDADYNPLVASVSS 155
KG S Y +KMK LADEM AAGK +DDDD++SYI+ GLD Y P+++++
Sbjct: 133 IALSNTKKGTLSINEYVSKMKALADEMTAAGKIVDDDDLISYIIAGLDDTYEPVISTIVG 192
Query: 156 KDYISL 161
KD ++L
Sbjct: 193 KDTMTL 198
>Os12g0132600
Length = 209
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 86/143 (60%), Gaps = 14/143 (9%)
Query: 14 VLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKES 73
+LG V+EKL++ NF++W+AQVL A+RGAQL G+LD + + PS + ++ K G+ E
Sbjct: 12 ILGQVVTEKLTKTNFVLWKAQVLAALRGAQLAGFLDNSIKPPSKMVVLQDKDGN--TGEK 69
Query: 74 VNNPAYSQWIAHDXXXXXXXXXXXXXXELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDD 133
V N AY+QW+A + S + T++ L + GK +DD++
Sbjct: 70 VVNAAYTQWVAQEQQVLSYLLM----------SLSREVLTQVATLTPSI--GGKPMDDEE 117
Query: 134 IVSYILGGLDADYNPLVASVSSK 156
+V+YIL GLD DYN +V+SV+++
Sbjct: 118 LVTYILAGLDFDYNSVVSSVANR 140
>Os04g0126401
Length = 165
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 73/156 (46%), Gaps = 43/156 (27%)
Query: 15 LGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKESV 74
L PV+EKL+R NF +WRAQVL +RGAQ+ G++DGTKE+P+P V+K D +V
Sbjct: 14 LSQPVTEKLARGNFSLWRAQVLATLRGAQMAGFVDGTKEMPAPTKIVKKDEKDIVVP--- 70
Query: 75 NNPAYSQWIAHDXXXXXXXXXXXXXXEL-------------------------------- 102
NP Y++W+A + L
Sbjct: 71 -NPDYTEWVAQEQQVLSYLLLSLSREILSQVVHMNTAAGVWTAIEGMFTSQSRARAINTR 129
Query: 103 -------KGDSSAAAYFTKMKGLADEMAAAGKKLDD 131
KG+ S Y KM+GLADEM A GKKLDD
Sbjct: 130 MALATTQKGNLSVINYVNKMRGLADEMTATGKKLDD 165
>Os10g0190300
Length = 221
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%), Gaps = 30/138 (21%)
Query: 16 GHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKESVN 75
G V EKL+R NFL+W+ Q+LP +RGA P++
Sbjct: 14 GQAVPEKLTRTNFLLWKGQILPVIRGA--------------PQVW--------------- 44
Query: 76 NPAYSQWIAHDXXXXXXXXXXXXXXELKGDSSAAAYFTKMKGLADEMAAAGKKLDDDDIV 135
A ++ ++ KGD S + Y +KMK LADEM +AGK LDD++++
Sbjct: 45 -KAITEMLSSHSRARSLNTRLALATTQKGDLSVSDYISKMKVLADEMTSAGKPLDDEELM 103
Query: 136 SYILGGLDADYNPLVASV 153
SYIL GLD D+ P+V+S+
Sbjct: 104 SYILAGLDDDWEPVVSSL 121
>Os10g0204225
Length = 150
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 1 MAXXXXXXXXXXAVLGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEIT 60
MA ++ G PV+EKL R+NFL+W+ QVLPAVRGAQ+ GYLDGT VP P
Sbjct: 1 MASSSVMATASPSLFGQPVAEKLGRNNFLLWKTQVLPAVRGAQMMGYLDGTT-VP-PARL 58
Query: 61 VEKKVGDDLVKESVNNPAYSQWIAHD 86
++ K G+ +VK + NP Y++W+ D
Sbjct: 59 IDVKEGEKVVKAT--NPEYTKWVVAD 82
>Os05g0317500
Length = 135
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 15 LGHPVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKESV 74
L PV+EKL+R NF +WRAQVL +RGAQ+ G+ DGTKE+P+P V+K D +V
Sbjct: 14 LSQPVTEKLARGNFSLWRAQVLATLRGAQMAGFFDGTKEMPAPTKIVKKDEKDIVVP--- 70
Query: 75 NNPAYSQWIAHD 86
NP Y++W+A +
Sbjct: 71 -NPDYTEWVAQE 81
>Os09g0462500
Length = 107
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 50/69 (72%), Gaps = 4/69 (5%)
Query: 18 PVSEKLSRDNFLVWRAQVLPAVRGAQLTGYLDGTKEVPSPEITVEKKVGDDLVKESVNNP 77
PV EKL + N+L+W+AQVLP +RGAQ+ GYLDGT EVP EI V++ GD ++K+ N
Sbjct: 17 PVIEKLGKGNYLLWKAQVLPTIRGAQMFGYLDGTAEVPVKEIKVKE--GDKVIKKV--NS 72
Query: 78 AYSQWIAHD 86
+++W+ D
Sbjct: 73 DFTRWVTED 81
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,840,528
Number of extensions: 193781
Number of successful extensions: 464
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 18
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)