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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0132600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0162) R2 : 0.000197
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0102 (0.0341) R2dN8 : 0.000254 R2N8 : 0.000197
σ : 0.305
deviance : 42.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.58 0.292 2.98 -0.168 0.104 5.05 -0.114 -17.4 0.0153 12.3 1.391 181 -- --
41.94 0.302 2.95 -0.0144 0.0919 0.0141 -0.175 -- 0.0092 11.6 2.294 51 -- --
38.62 0.289 2.98 -0.173 0.105 5.03 -- -17.2 0.016 12.7 1.373 197 -- --
39.28 0.292 2.95 -0.0579 0.116 1.05 -- -- 0.0142 11.3 1.734 275 -- --
39.31 0.292 2.99 -0.197 -- 5.22 -- -18.1 0.0082 -- 1.249 197 -- --
41.89 0.303 2.95 -0.0176 0.106 -- -0.0758 -- 0.0101 13.3 -- -- -- --
41.91 0.303 2.95 -0.0199 0.108 -- -- -- 0.00994 13.8 -- -- -- --
39.83 0.294 2.95 -0.0492 -- 1.09 -- -- 0.0152 -- 1.5 235 -- --
39.14 0.291 2.95 -- 0.109 1.09 -- -- 0.021 12.8 1.5 266 -- --
42.61 0.305 2.95 -0.0243 -- -- -- -- 0.0075 -- -- -- -- --
41.92 0.303 2.95 -- 0.108 -- -- -- 0.0122 13.8 -- -- -- --
39.89 0.294 2.95 -- -- 1.07 -- -- 0.0188 -- 1.5 256 -- --
42.62 0.305 2.95 -- -- -- -- -- 0.0102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.75 radiation 1.0 90 < th dose independent rect. 8 1
4 36.75 radiation 1.0 90 < th dose dependent rect. 8 1
11 38.18 precipitation 0.1 270 > th dose dependent rect. 13 5
19 38.33 radiation 1.0 720 > th dose independent rect. 4 1
29 38.33 radiation 1.0 720 > th dose dependent rect. 4 1
45 38.56 atmosphere 1000.0 270 < th dose independent rect. 16 1
46 38.57 atmosphere 1000.0 270 < th dose dependent rect. 16 1
47 38.61 precipitation 0.1 270 > th dose independent rect. 16 1
49 38.61 precipitation 0.1 270 > th dose dependent rect. 16 1
57 38.68 precipitation 0.1 270 > th dose independent rect. 16 3
64 38.72 precipitation 0.1 270 > th dose independent rect. 13 5
68 38.73 temperature 20.0 10 < th dose independent rect. 13 7
78 38.75 temperature 20.0 10 < th dose independent rect. 15 5
82 38.77 temperature 20.0 10 < th dose independent rect. 19 1
92 38.77 temperature 20.0 10 < th dose independent rect. 9 11
114 39.04 humidity 80.0 720 < th dose independent rect. 23 3
118 39.09 humidity 80.0 720 < th dose dependent rect. 23 3
120 39.11 humidity 80.0 720 < th dose independent rect. 23 1
127 39.15 humidity 80.0 720 < th dose dependent rect. 23 1
138 39.25 radiation 30.0 10 < th dose independent rect. 10 1
139 39.26 wind 3.0 30 > th dose independent rect. 10 1
142 39.27 wind 1.0 270 < th dose independent rect. 6 1
149 39.32 atmosphere 1005.0 30 > th dose independent rect. 10 1
150 39.32 atmosphere 1010.0 10 < th dose independent rect. 10 1
153 39.32 humidity 50.0 30 > th dose dependent rect. 10 1
157 39.33 radiation 40.0 30 < th dose dependent rect. 10 1
165 39.36 radiation 10.0 30 > th dose independent rect. 10 1
171 39.38 temperature 20.0 30 > th dose independent rect. 10 1
172 39.38 temperature 30.0 30 < th dose independent rect. 10 1
173 39.38 humidity 60.0 30 > th dose independent rect. 10 1
175 39.39 wind 5.0 30 < th dose independent rect. 10 1
178 39.39 humidity 80.0 30 < th dose independent rect. 10 1
180 39.40 temperature 10.0 30 > th dose independent rect. 10 1
187 39.40 precipitation 0.1 30 < th dose independent rect. 10 1
188 39.40 temperature 10.0 30 > th dose independent rect. 11 23
189 39.40 precipitation 0.1 30 < th dose dependent rect. 10 1
190 39.41 precipitation 0.1 270 > th dose dependent sin 21 NA
191 39.41 temperature 10.0 30 > th dose dependent rect. 10 1
192 39.41 atmosphere 995.0 30 > th dose dependent rect. 10 1
194 39.42 wind 9.0 30 < th dose dependent rect. 10 1
196 39.43 wind 1.0 30 > th dose dependent rect. 10 1
198 39.43 atmosphere 1015.0 30 < th dose dependent rect. 10 1
215 39.50 humidity 90.0 30 < th dose dependent rect. 10 1
220 39.51 wind 1.0 30 < th dose independent rect. 10 1
222 39.51 temperature 10.0 1440 > th dose independent rect. 11 1
226 39.51 atmosphere 995.0 1440 > th dose independent rect. 11 1
229 39.51 precipitation 0.1 1440 < th dose independent rect. 11 1
230 39.51 temperature 10.0 1440 > th dose independent rect. 12 23
234 39.51 wind 1.0 30 < th dose dependent rect. 10 1
235 39.51 precipitation 0.1 1440 < th dose dependent rect. 11 1
246 39.52 atmosphere 1005.0 10 < th dose independent rect. 20 1
248 39.52 radiation 1.0 30 > th dose dependent rect. 10 1
295 39.66 atmosphere 1005.0 10 < th dose independent rect. 18 3
337 39.79 radiation 20.0 10 < th dose independent sin 9 NA
338 39.79 atmosphere 1005.0 30 > th dose independent rect. 7 4
356 39.83 atmosphere 1005.0 270 > th dose independent rect. 7 1
372 39.88 humidity 90.0 270 < th dose independent rect. 7 1
428 39.95 wind 3.0 270 < th dose dependent rect. 6 1
436 39.97 temperature 20.0 270 > th dose independent rect. 7 1
464 40.06 humidity 80.0 4320 > th dose independent rect. 23 1
475 40.08 atmosphere 1015.0 30 < th dose dependent rect. 11 9
476 40.09 precipitation 0.1 270 < th dose independent sin 21 NA
479 40.09 precipitation 0.1 270 < th dose dependent sin 21 NA
496 40.12 temperature 25.0 90 < th dose dependent rect. 18 1
502 40.13 atmosphere 1000.0 720 < th dose dependent rect. 8 6
513 40.14 wind 9.0 30 < th dose independent rect. 11 23
541 40.20 wind 9.0 1440 < th dose independent rect. 19 14
543 40.20 humidity 90.0 4320 < th dose dependent rect. 24 1
550 40.21 atmosphere 995.0 10 > th dose independent rect. 11 23
559 40.22 atmosphere 1000.0 720 < th dose independent rect. 8 5
560 40.23 atmosphere 1010.0 30 < th dose independent rect. 7 4
561 40.23 atmosphere 1010.0 10 < th dose independent rect. 11 9
562 40.23 atmosphere 1000.0 720 < th dose dependent rect. 11 2
574 40.24 radiation 30.0 270 < th dose independent rect. 7 1
586 40.26 radiation 10.0 270 < th dose independent sin 11 NA
588 40.26 humidity 80.0 4320 < th dose independent rect. 23 1
590 40.26 temperature 25.0 10 < th dose dependent rect. 19 1
605 40.27 wind 9.0 1440 < th dose independent rect. 19 11
607 40.27 temperature 15.0 270 > th dose dependent rect. 7 1
616 40.27 precipitation 0.1 270 > th dose dependent rect. 17 21
623 40.28 wind 5.0 30 < th dose independent rect. 7 4
624 40.28 temperature 20.0 30 > th dose independent rect. 7 4
641 40.29 wind 9.0 1440 > th dose dependent rect. 18 3
651 40.30 precipitation 0.1 270 < th dose independent rect. 8 23
657 40.30 atmosphere 1015.0 30 < th dose dependent rect. 11 20
659 40.30 precipitation 0.1 270 < th dose dependent rect. 8 23
660 40.31 precipitation 0.1 270 > th dose independent sin 20 NA
682 40.33 radiation 20.0 10 > th dose independent rect. 8 3
698 40.34 humidity 90.0 30 < th dose independent rect. 7 4
702 40.34 radiation 10.0 270 < th dose independent rect. 21 11
703 40.34 precipitation 0.1 270 > th dose dependent no NA NA
715 40.35 temperature 20.0 10 < th dose independent sin 21 NA
719 40.35 radiation 10.0 10 > th dose independent rect. 6 5
745 40.36 radiation 1.0 1440 < th dose independent rect. 22 7
747 40.36 radiation 20.0 10 < th dose independent rect. 24 12
748 40.36 atmosphere 1005.0 10 > th dose independent rect. 7 15
749 40.36 atmosphere 1010.0 30 < th dose independent rect. 11 20
754 40.37 wind 9.0 1440 > th dose independent rect. 19 2
759 40.37 precipitation 0.1 30 < th dose independent rect. 11 23
765 40.37 temperature 15.0 30 > th dose dependent rect. 7 4
766 40.37 precipitation 0.1 30 < th dose dependent rect. 11 23
798 40.38 humidity 50.0 10 > th dose independent rect. 11 20
799 40.38 humidity 50.0 10 > th dose independent rect. 11 23
816 40.38 radiation 10.0 1440 < th dose dependent rect. 20 9
826 40.39 humidity 90.0 30 < th dose independent rect. 7 1
837 40.40 atmosphere 1005.0 30 > th dose independent rect. 7 1
841 40.40 wind 9.0 1440 < th dose independent rect. 19 7
858 40.41 atmosphere 1010.0 10 < th dose independent rect. 11 7
869 40.41 radiation 10.0 1440 < th dose dependent rect. 22 7
877 40.42 humidity 70.0 270 > th dose independent rect. 7 1
882 40.42 radiation 40.0 30 < th dose independent rect. 7 4
889 40.42 atmosphere 995.0 270 > th dose dependent rect. 7 1
896 40.43 humidity 60.0 30 > th dose independent rect. 7 4
897 40.43 temperature 25.0 30 < th dose independent rect. 7 5
900 40.43 atmosphere 1005.0 10 > th dose independent rect. 7 8
902 40.43 radiation 1.0 1440 < th dose independent rect. 20 9
908 40.43 radiation 20.0 10 < th dose independent rect. 8 23
910 40.43 humidity 90.0 4320 < th dose dependent rect. 22 7
916 40.44 radiation 1.0 270 > th dose independent rect. 7 1
921 40.44 humidity 80.0 720 > th dose independent rect. 22 7
935 40.45 wind 5.0 30 < th dose independent rect. 20 15
947 40.46 temperature 20.0 10 > th dose independent sin 21 NA
949 40.46 wind 1.0 270 > th dose independent rect. 7 1
955 40.46 radiation 1.0 1440 < th dose independent rect. 24 5
974 40.46 atmosphere 1015.0 10 < th dose dependent rect. 11 7
978 40.47 wind 1.0 30 > th dose independent rect. 7 4
989 40.47 radiation 20.0 10 < th dose independent rect. 24 10