Os01g0123000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Retrofit.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0123000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Retrofit.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 384.79 | 0.922 | 2.77 | 0.683 | 0.19 | -51.3 | 1.07 | 138 | -0.102 | 3.51 | 46.03 | 152 | -- | -- |
| 391.85 | 0.922 | 3.1 | -0.129 | 0.17 | 3.58 | 0.955 | -- | -0.105 | 3.45 | 45.19 | 107 | -- | -- |
| 386.96 | 0.916 | 2.74 | 0.778 | 0.163 | -56.2 | -- | 149 | -0.103 | 2.79 | 45 | 145 | -- | -- |
| 392.1 | 0.922 | 3.1 | -0.148 | 0.208 | 3.97 | -- | -- | -0.108 | 1.99 | 46 | 146 | -- | -- |
| 388.44 | 0.918 | 2.66 | 1.01 | -- | -61.5 | -- | 162 | -0.103 | -- | 44.14 | 115 | -- | -- |
| 415.31 | 0.955 | 3.1 | 0.0269 | 0.121 | -- | 0.48 | -- | -0.115 | 2.75 | -- | -- | -- | -- |
| 416.06 | 0.955 | 3.1 | 0.0154 | 0.123 | -- | -- | -- | -0.117 | 1.82 | -- | -- | -- | -- |
| 394.45 | 0.925 | 3.09 | -0.12 | -- | 3.87 | -- | -- | -0.105 | -- | 46 | 146 | -- | -- |
| 392.56 | 0.923 | 3.09 | -- | 0.197 | 3.86 | -- | -- | -0.0967 | 2.03 | 46 | 146 | -- | -- |
| 416.98 | 0.954 | 3.1 | 0.0205 | -- | -- | -- | -- | -0.115 | -- | -- | -- | -- | -- |
| 416.07 | 0.954 | 3.1 | -- | 0.123 | -- | -- | -- | -0.119 | 1.82 | -- | -- | -- | -- |
| 394.82 | 0.925 | 3.09 | -- | -- | 3.75 | -- | -- | -0.0892 | -- | 46 | 146 | -- | -- |
| 416.99 | 0.953 | 3.1 | -- | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 383.73 | humidity | 50.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 3 | 383.88 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 5 | 383.88 | wind | 1.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 8 | 384.00 | humidity | 50.0 | 90 | < th | dose independent | sin | 12 | NA |
| 9 | 384.31 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 13 | 384.79 | humidity | 50.0 | 90 | < th | dose independent | rect. | 14 | 21 |
| 14 | 384.81 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 14 | 3 |
| 51 | 385.17 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 15 | 3 |
| 87 | 385.22 | humidity | 50.0 | 90 | < th | dose independent | rect. | 14 | 3 |
| 90 | 385.33 | humidity | 50.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 113 | 385.38 | humidity | 50.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 136 | 385.52 | humidity | 50.0 | 10 | < th | dose independent | rect. | 15 | 3 |
| 254 | 387.55 | humidity | 50.0 | 90 | > th | dose independent | sin | 12 | NA |
| 296 | 388.50 | temperature | 20.0 | 30 | < th | dose independent | rect. | 11 | 9 |
| 298 | 388.73 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 299 | 388.74 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 10 | 10 |
| 313 | 389.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 319 | 389.66 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 326 | 389.86 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 372 | 391.01 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 373 | 391.01 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 21 | 6 |
| 414 | 391.75 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 424 | 392.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 426 | 392.13 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 429 | 392.24 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 430 | 392.24 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 458 | 392.62 | humidity | 50.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 475 | 392.64 | humidity | 50.0 | 270 | < th | dose independent | rect. | 11 | 5 |
| 519 | 392.80 | temperature | 30.0 | 30 | > th | dose independent | rect. | 14 | 3 |
| 551 | 392.92 | humidity | 50.0 | 270 | < th | dose independent | sin | 21 | NA |
| 558 | 392.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 561 | 393.00 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 585 | 393.13 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 13 |
| 586 | 393.13 | humidity | 50.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 589 | 393.15 | humidity | 50.0 | 270 | < th | dose independent | no | NA | NA |
| 704 | 393.15 | humidity | 50.0 | 270 | < th | dose independent | rect. | 17 | 23 |
| 711 | 393.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 10 | 5 |
| 778 | 393.35 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 781 | 393.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 782 | 393.38 | humidity | 50.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 783 | 393.38 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 785 | 393.39 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 12 |
| 793 | 393.46 | humidity | 50.0 | 270 | < th | dose independent | rect. | 12 | 1 |
| 797 | 393.47 | humidity | 50.0 | 270 | < th | dose dependent | no | NA | NA |
| 798 | 393.47 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 935 | 393.48 | humidity | 50.0 | 270 | < th | dose independent | rect. | 15 | 23 |
| 994 | 393.51 | wind | 5.0 | 90 | > th | dose dependent | rect. | 18 | 8 |