BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0708100 Os11g0708100|AK060544
(49 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0708100 Similar to Laccase (EC 1.10.3.2) (Fragment) 107 3e-24
Os01g0634500 82 8e-17
Os03g0273200 Similar to Laccase (EC 1.10.3.2) 77 3e-15
Os01g0842500 Similar to Laccase (EC 1.10.3.2) 77 3e-15
Os01g0842400 Similar to Laccase (EC 1.10.3.2) 74 3e-14
Os01g0844050 Similar to Laccase (EC 1.10.3.2) 74 3e-14
Os11g0108700 Similar to Laccase (Diphenol oxidase) 64 3e-11
Os01g0827300 Similar to Laccase precursor (EC 1.10.3.2) 64 4e-11
Os12g0108000 Similar to Laccase (Diphenol oxidase) 63 4e-11
Os01g0850700 Cupredoxin domain containing protein 62 7e-11
>Os11g0708100 Similar to Laccase (EC 1.10.3.2) (Fragment)
Length = 49
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 LSCYIAGVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
LSCYIAGVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC
Sbjct: 1 LSCYIAGVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
>Os01g0634500
Length = 562
Score = 82.0 bits (201), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWF+HCH EVHTSWGLKMAF+V++G P E+++PPPKDLP+C
Sbjct: 520 GVWFLHCHLEVHTSWGLKMAFLVEDGSGPDESVLPPPKDLPKC 562
>Os03g0273200 Similar to Laccase (EC 1.10.3.2)
Length = 578
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWFMHCH EVHT+WGLKMA+VV++G P + L+PPP DLP C
Sbjct: 536 GVWFMHCHLEVHTTWGLKMAWVVNDGPLPEQKLMPPPSDLPMC 578
>Os01g0842500 Similar to Laccase (EC 1.10.3.2)
Length = 577
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/43 (67%), Positives = 36/43 (83%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWFMHCH EVH SWGLKMA+VV +G P++ ++PPP DLP+C
Sbjct: 535 GVWFMHCHLEVHVSWGLKMAWVVQDGSLPNQKILPPPSDLPKC 577
>Os01g0842400 Similar to Laccase (EC 1.10.3.2)
Length = 579
Score = 73.9 bits (180), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWFMHCH E HT+WGL+MA++V +G P++ L+PPP DLP+C
Sbjct: 537 GVWFMHCHLEAHTTWGLRMAWLVLDGSHPNQKLLPPPSDLPKC 579
>Os01g0844050 Similar to Laccase (EC 1.10.3.2)
Length = 547
Score = 73.6 bits (179), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/43 (62%), Positives = 36/43 (83%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW MHCHF+VH SWGL MA++V++G PS+ ++PPP DLP+C
Sbjct: 505 GVWLMHCHFDVHLSWGLSMAWLVNDGPLPSQKMLPPPSDLPKC 547
>Os11g0108700 Similar to Laccase (Diphenol oxidase)
Length = 522
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW MHCH +VH +WGL MAF+VD+G ++L PP DLP C
Sbjct: 480 GVWLMHCHLDVHITWGLAMAFLVDDGVGELQSLEAPPPDLPLC 522
>Os01g0827300 Similar to Laccase precursor (EC 1.10.3.2)
Length = 567
Score = 63.5 bits (153), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW MHCH +VH +WGL MAF+V++G ETL PP DLP C
Sbjct: 525 GVWLMHCHLDVHITWGLAMAFLVEDGYGKLETLEAPPVDLPMC 567
>Os12g0108000 Similar to Laccase (Diphenol oxidase)
Length = 567
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW MHCH +VH +WGL MAF+VD+G ++L PP DLP C
Sbjct: 525 GVWLMHCHLDVHITWGLAMAFLVDDGVGELQSLEAPPPDLPLC 567
>Os01g0850700 Cupredoxin domain containing protein
Length = 559
Score = 62.4 bits (150), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 27/43 (62%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
G+WF HCH + H GL M F VDNG P L PPP DLP+C
Sbjct: 517 GMWFFHCHLDAHVPMGLGMVFAVDNGTTPDSFLPPPPADLPKC 559
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.142 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,299,048
Number of extensions: 66815
Number of successful extensions: 202
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 15
Length of query: 49
Length of database: 17,035,801
Length adjustment: 22
Effective length of query: 27
Effective length of database: 15,887,093
Effective search space: 428951511
Effective search space used: 428951511
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)