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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0842500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Laccase (EC 1.10.3.2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0701) R2 : 0.267
β1 : -3.24 (0.274) R2dD : 0.281 R2D : 0.166
β2 : 0.121 (0.493) R2dC : 0.000885 R2C : -0.00815
β3 : 0.37 (0.413) R2dE : 0.0117 R2E : 0.0109
β4 : 14.2 (2.14) R2dD*C : 0.826 R2D*C : -0.852
β5 : 12.9 (1.91) R2dD*E : 0.854 R2D*E : -0.762
γ1 : 0.0265 (0.148) R2dN8 : 7.14e-05 R2N8 : 0.000166
σ : 1.29
deviance : 749.58
__
_____
C
peak time of C : 13.1
E
wheather : radiation
threshold : 0.3
memory length : 282
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
749.58 1.29 3.83 -3.24 0.121 0.37 14.2 12.9 0.0265 13.1 0.3 282 -- --
804.88 1.33 3.72 -2.56 0.393 0.282 2.77 -- 0.203 6.83 0.3 282 -- --
817.38 1.34 3.73 -2.56 0.409 0.375 -- -0.7 0.185 6.6 13.55 2197 -- --
808.94 1.32 3.75 -2.44 0.572 -0.559 -- -- 0.179 4.52 8.346 1389 -- --
825.76 1.35 3.73 -2.55 -- 0.315 -- -0.662 0.194 -- 13.55 2197 -- --
811.96 1.34 3.72 -2.56 0.343 -- 2.74 -- 0.2 6.2 -- -- -- --
822.25 1.34 3.73 -2.54 0.51 -- -- -- 0.185 3.19 -- -- -- --
815.64 1.33 3.79 -2.5 -- -0.847 -- -- 0.0459 -- 7.98 1390 -- --
977.52 1.46 3.72 -- 0.595 -0.685 -- -- 0.309 2.16 10 1519 -- --
837.04 1.35 3.73 -2.52 -- -- -- -- 0.198 -- -- -- -- --
992.23 1.47 3.67 -- 0.46 -- -- -- 0.468 3.19 -- -- -- --
984.31 1.46 3.7 -- -- -0.859 -- -- 0.327 -- 10.01 1384 -- --
1004.27 1.48 3.67 -- -- -- -- -- 0.477 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 746.22 humidity 70 1440 > th dose dependent rect. 3 12
5 746.68 radiation 10 1440 < th dose independent rect. 15 1
6 747.22 wind 1 14400 < th dose independent rect. 1 2
19 750.29 humidity 80 270 > th dose independent rect. 7 14
20 750.36 humidity 80 270 > th dose independent rect. 5 16
21 750.65 humidity 70 1440 > th dose dependent sin 3 NA
22 750.67 humidity 80 270 > th dose independent sin 23 NA
25 750.82 atmosphere 995 43200 < th dose dependent rect. 18 5
44 752.67 radiation 1 270 < th dose dependent rect. 8 23
58 753.62 radiation 1 270 < th dose dependent no NA NA
60 753.64 radiation 1 270 < th dose dependent rect. 12 23
78 754.38 humidity 80 720 > th dose dependent rect. 3 20
92 754.90 humidity 80 720 > th dose dependent rect. 4 17
93 754.93 radiation 1 270 < th dose dependent rect. 17 23
100 755.08 atmosphere 995 43200 > th dose independent rect. 20 2
110 755.38 atmosphere 995 43200 > th dose independent rect. 22 1
115 755.47 wind 1 14400 < th dose dependent rect. 1 2
118 755.51 radiation 1 270 < th dose dependent rect. 15 23
133 755.74 atmosphere 995 43200 < th dose independent rect. 21 1
145 755.74 atmosphere 995 43200 < th dose dependent rect. 21 1
173 756.14 radiation 1 720 < th dose dependent rect. 3 13
187 756.42 atmosphere 995 43200 < th dose independent rect. 18 7
200 756.62 radiation 1 720 < th dose dependent rect. 1 15
204 756.64 humidity 70 720 > th dose dependent rect. 18 22
205 756.66 wind 1 14400 > th dose independent rect. 1 2
216 756.93 radiation 1 270 < th dose dependent rect. 6 23
219 756.99 humidity 90 720 > th dose dependent rect. 3 2
224 757.04 radiation 1 270 < th dose dependent rect. 4 23
234 757.32 humidity 70 720 > th dose dependent rect. 9 23
269 757.83 humidity 80 270 > th dose independent rect. 7 11
275 757.97 atmosphere 995 43200 > th dose independent rect. 18 9
321 758.52 humidity 70 720 > th dose dependent no NA NA
330 758.61 humidity 80 270 < th dose independent rect. 11 22
361 758.96 radiation 10 1440 < th dose dependent rect. 11 6
372 759.07 radiation 10 1440 < th dose dependent rect. 11 8
375 759.11 humidity 80 270 < th dose independent sin 21 NA
385 759.16 humidity 70 720 > th dose dependent rect. 22 23
386 759.17 radiation 10 1440 < th dose dependent rect. 11 11
387 759.17 radiation 10 1440 < th dose dependent rect. 11 13
396 759.21 humidity 70 720 > th dose dependent rect. 7 23
419 759.38 radiation 10 1440 > th dose independent rect. 11 7
449 759.60 humidity 70 720 > th dose dependent rect. 15 23
460 759.70 humidity 80 270 > th dose independent rect. 1 22
478 759.82 radiation 1 270 < th dose dependent rect. 1 23
486 759.91 temperature 20 90 > th dose dependent rect. 3 2
532 760.27 radiation 1 270 < th dose independent rect. 8 23
588 760.65 radiation 1 720 < th dose dependent sin 3 NA
589 760.65 humidity 70 1440 > th dose dependent rect. 11 3
595 760.68 wind 7 30 < th dose independent rect. 5 23
615 760.84 humidity 80 270 > th dose independent rect. 19 22
634 761.01 humidity 80 270 > th dose independent rect. 22 23
645 761.04 humidity 70 270 > th dose dependent rect. 7 14
648 761.07 radiation 1 720 < th dose dependent rect. 23 17
668 761.22 humidity 90 720 < th dose independent rect. 24 17
690 761.34 temperature 15 90 > th dose independent rect. 5 23
707 761.44 wind 3 90 < th dose dependent rect. 3 2
725 761.54 humidity 80 1440 > th dose independent rect. 2 13
732 761.58 humidity 90 720 > th dose independent rect. 24 16
738 761.61 humidity 80 270 < th dose independent rect. 24 21
752 761.69 wind 7 720 < th dose independent rect. 11 6
754 761.71 temperature 25 30 < th dose independent rect. 4 1
768 761.80 temperature 25 30 < th dose dependent rect. 4 1
781 761.87 radiation 10 1440 > th dose independent sin 17 NA
799 761.95 humidity 80 1440 > th dose independent rect. 6 9
804 761.96 wind 7 720 > th dose independent rect. 12 1
850 762.20 radiation 1 270 < th dose independent rect. 18 23
855 762.23 wind 7 720 < th dose independent rect. 5 12
860 762.25 radiation 1 270 < th dose independent rect. 6 23
878 762.33 wind 7 720 > th dose dependent rect. 12 1
882 762.35 radiation 10 1440 < th dose dependent sin 18 NA
988 762.81 wind 1 1440 < th dose dependent rect. 4 1