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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0708100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Laccase (EC 1.10.3.2) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.056) R2 : 0.23
β1 : -1.98 (0.207) R2dD : 0.166 R2D : 0.186
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.97 (0.581) R2dE : 0.0438 R2E : 0.0642
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000881 (0.12) R2dN8 : 1.95e-07 R2N8 : -7.46e-05
σ : 1.05
deviance : 505.29
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 992.2
memory length : 2734
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
497.59 1.05 3.63 -2.95 0.241 3.08 -0.668 -15.6 -0.0124 24 999.6 1602 -- --
502.57 1.04 3.49 -2.07 0.264 3.24 -0.464 -- -0.0268 0.00141 991.5 2014 -- --
498.7 1.04 3.61 -2.83 0.278 2.76 -- -13.9 -0.0176 1.87 999.5 1739 -- --
501.15 1.04 3.46 -1.99 0.267 3.18 -- -- -0.00324 0.591 992.2 2733 -- --
503.13 1.04 3.61 -2.84 -- 2.69 -- -13.6 -0.00871 -- 999.9 1674 -- --
529.72 1.08 3.49 -2.15 0.225 -- -0.282 -- -0.0661 1.08 -- -- -- --
529.83 1.08 3.49 -2.15 0.237 -- -- -- -0.0658 2.14 -- -- -- --
505.29 1.05 3.46 -1.98 -- 2.97 -- -- -0.000881 -- 992.2 2734 -- --
605.74 1.15 3.45 -- 0.2 3.45 -- -- 0.13 0.842 992.1 2735 -- --
533.2 1.08 3.49 -2.14 -- -- -- -- -0.0602 -- -- -- -- --
651.24 1.19 3.43 -- 0.197 -- -- -- 0.173 1.91 -- -- -- --
608.91 1.15 3.45 -- -- 3.4 -- -- 0.161 -- 992.2 2735 -- --
653.59 1.19 3.43 -- -- -- -- -- 0.177 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 485.97 radiation 40.0 4320 > th dose independent rect. 7 1
17 485.97 radiation 40.0 4320 > th dose dependent rect. 7 1
33 486.67 temperature 20.0 4320 < th dose independent rect. 16 1
34 487.18 temperature 20.0 4320 > th dose independent rect. 16 1
36 487.67 humidity 90.0 1440 > th dose independent rect. 5 1
41 491.58 radiation 30.0 4320 > th dose independent rect. 16 1
72 492.62 wind 1.0 14400 < th dose independent rect. 24 3
73 492.71 precipitation 0.1 4320 > th dose independent rect. 1 1
74 492.71 precipitation 0.1 4320 > th dose dependent rect. 1 1
75 492.80 humidity 90.0 720 > th dose dependent rect. 5 1
76 493.19 precipitation 0.1 4320 < th dose independent rect. 1 1
77 493.19 precipitation 0.1 4320 < th dose dependent rect. 1 1
79 493.93 wind 1.0 14400 > th dose independent rect. 24 3
80 494.33 wind 3.0 1440 < th dose independent rect. 8 1
82 494.54 atmosphere 995.0 4320 > th dose independent rect. 24 6
84 494.76 atmosphere 995.0 4320 > th dose independent rect. 24 10
90 495.16 atmosphere 995.0 4320 > th dose independent rect. 24 8
99 495.67 atmosphere 995.0 4320 > th dose independent rect. 19 11
100 495.69 atmosphere 1000.0 1440 > th dose independent rect. 11 2
102 495.86 radiation 40.0 43200 > th dose independent rect. 7 1
116 495.86 atmosphere 995.0 4320 > th dose independent rect. 19 15
119 495.86 radiation 40.0 43200 > th dose dependent rect. 7 1
136 496.16 atmosphere 995.0 4320 > th dose independent rect. 19 13
139 496.28 wind 3.0 1440 > th dose independent rect. 8 1
145 496.39 wind 3.0 1440 < th dose dependent rect. 7 2
147 496.45 atmosphere 995.0 43200 > th dose independent sin 9 NA
149 496.57 atmosphere 1000.0 1440 < th dose independent rect. 10 4
150 496.57 radiation 30.0 1440 > th dose dependent rect. 16 1
166 496.64 atmosphere 995.0 4320 > th dose independent rect. 24 4
167 496.68 atmosphere 995.0 43200 < th dose independent sin 9 NA
172 496.81 atmosphere 995.0 4320 > th dose independent rect. 19 7
173 496.85 wind 9.0 4320 < th dose independent rect. 23 2
176 496.88 wind 3.0 4320 > th dose independent rect. 5 4
183 496.99 humidity 90.0 4320 > th dose dependent rect. 12 2
188 497.15 atmosphere 995.0 4320 > th dose independent rect. 24 2
189 497.17 wind 3.0 4320 < th dose independent rect. 5 4
192 497.21 atmosphere 995.0 43200 > th dose independent rect. 18 16
196 497.29 atmosphere 995.0 43200 < th dose independent rect. 18 16
201 497.37 atmosphere 995.0 43200 < th dose dependent sin 12 NA
202 497.38 temperature 15.0 4320 < th dose independent rect. 4 2
216 497.69 atmosphere 1000.0 1440 < th dose dependent rect. 10 4
218 497.72 precipitation 0.1 4320 < th dose independent rect. 23 4
220 497.72 precipitation 0.1 4320 < th dose dependent rect. 23 4
223 497.76 atmosphere 1000.0 1440 < th dose dependent rect. 8 7
224 497.77 atmosphere 1000.0 1440 < th dose dependent rect. 13 1
227 497.80 humidity 90.0 1440 < th dose independent rect. 5 1
232 497.85 atmosphere 995.0 43200 < th dose independent rect. 21 12
244 497.90 wind 9.0 4320 > th dose independent rect. 21 1
245 497.90 atmosphere 995.0 43200 > th dose independent rect. 21 12
246 497.91 atmosphere 995.0 43200 > th dose independent rect. 19 14
252 497.94 wind 3.0 1440 < th dose dependent rect. 6 4
263 498.01 wind 9.0 4320 > th dose dependent rect. 21 1
285 498.11 atmosphere 1000.0 1440 < th dose dependent sin 0 NA
343 498.36 atmosphere 995.0 4320 > th dose independent rect. 5 1
396 498.48 atmosphere 1000.0 1440 < th dose dependent rect. 15 1
411 498.52 temperature 20.0 4320 < th dose dependent rect. 17 1
435 498.57 atmosphere 1000.0 1440 < th dose independent rect. 4 17
508 498.72 wind 1.0 14400 < th dose independent rect. 13 15
571 498.81 atmosphere 995.0 4320 > th dose independent rect. 3 3
593 498.82 wind 3.0 14400 < th dose dependent rect. 22 2
598 498.83 radiation 40.0 4320 < th dose independent rect. 21 11
600 498.83 atmosphere 1000.0 1440 < th dose independent rect. 16 22
613 498.86 atmosphere 1000.0 1440 < th dose dependent no NA NA
634 498.92 atmosphere 1000.0 1440 < th dose independent rect. 17 6
640 498.93 atmosphere 1000.0 1440 < th dose independent rect. 17 4
641 498.93 atmosphere 995.0 43200 > th dose independent rect. 3 5
648 498.94 atmosphere 1000.0 1440 < th dose independent rect. 18 1
692 499.03 atmosphere 995.0 4320 > th dose independent rect. 3 7
699 499.04 atmosphere 1000.0 1440 < th dose independent rect. 4 11
719 499.07 atmosphere 1000.0 1440 > th dose independent rect. 18 4
721 499.07 radiation 40.0 4320 < th dose independent rect. 16 16
722 499.07 atmosphere 1000.0 1440 > th dose independent rect. 18 21
729 499.08 atmosphere 1000.0 1440 < th dose independent no NA NA
738 499.10 precipitation 0.1 4320 > th dose independent rect. 23 4
739 499.10 atmosphere 995.0 43200 < th dose independent rect. 3 5
744 499.10 precipitation 0.1 4320 > th dose dependent rect. 23 4
756 499.13 radiation 40.0 4320 < th dose independent rect. 6 2
778 499.17 atmosphere 1000.0 1440 > th dose independent rect. 24 21
806 499.25 atmosphere 1000.0 1440 < th dose independent sin 15 NA
847 499.33 wind 9.0 4320 > th dose dependent rect. 21 5
851 499.34 wind 1.0 14400 > th dose independent rect. 13 15
854 499.35 atmosphere 1000.0 1440 < th dose independent sin 1 NA
862 499.36 atmosphere 1000.0 1440 > th dose independent rect. 6 19
875 499.39 atmosphere 1000.0 1440 < th dose independent sin 21 NA
879 499.39 atmosphere 1000.0 1440 > th dose independent rect. 17 10
890 499.40 atmosphere 1000.0 1440 > th dose independent rect. 2 20
928 499.46 atmosphere 995.0 43200 < th dose dependent rect. 2 6
933 499.47 atmosphere 1000.0 1440 > th dose independent rect. 10 21
940 499.48 atmosphere 995.0 4320 > th dose independent rect. 3 5
949 499.49 atmosphere 1000.0 1440 > th dose independent no NA NA