BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0708100 Os11g0708100|AK060544
(49 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G58910.1 | chr5:23789522-23791681 REVERSE LENGTH=524 83 2e-17
AT2G38080.1 | chr2:15934540-15937352 FORWARD LENGTH=559 83 3e-17
AT5G01190.1 | chr5:72392-74612 FORWARD LENGTH=559 82 4e-17
AT5G03260.1 | chr5:777198-779338 REVERSE LENGTH=558 80 3e-16
AT1G18140.1 | chr1:6238986-6241393 REVERSE LENGTH=582 79 5e-16
AT5G60020.1 | chr5:24168072-24170223 FORWARD LENGTH=578 77 2e-15
AT2G29130.1 | chr2:12525189-12527699 REVERSE LENGTH=574 69 4e-13
AT5G05390.1 | chr5:1594753-1597042 FORWARD LENGTH=566 67 2e-12
AT2G46570.1 | chr2:19126872-19129069 FORWARD LENGTH=570 66 5e-12
AT2G40370.1 | chr2:16858192-16860593 REVERSE LENGTH=581 63 3e-11
AT2G30210.1 | chr2:12887735-12889827 REVERSE LENGTH=571 60 2e-10
AT5G09360.1 | chr5:2906426-2908658 REVERSE LENGTH=570 58 8e-10
AT5G07130.1 | chr5:2210567-2212525 FORWARD LENGTH=570 58 1e-09
AT5G01040.1 | chr5:13394-16142 REVERSE LENGTH=585 56 3e-09
AT5G01050.1 | chr5:18209-20812 REVERSE LENGTH=587 52 9e-08
AT5G48100.1 | chr5:19489530-19492582 REVERSE LENGTH=566 50 2e-07
>AT5G58910.1 | chr5:23789522-23791681 REVERSE LENGTH=524
Length = 523
Score = 83.2 bits (204), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/43 (74%), Positives = 38/43 (88%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWFMHCH E+HT+WGLKMAFVVDNG P ++L+PPP DLP+C
Sbjct: 481 GVWFMHCHLELHTTWGLKMAFVVDNGHGPDQSLLPPPADLPKC 523
>AT2G38080.1 | chr2:15934540-15937352 FORWARD LENGTH=559
Length = 558
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 41/43 (95%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWFMHCH EVHT+WGLKMAF+V+NGK P+++++PPPKDLP+C
Sbjct: 516 GVWFMHCHLEVHTTWGLKMAFLVENGKGPNQSILPPPKDLPKC 558
>AT5G01190.1 | chr5:72392-74612 FORWARD LENGTH=559
Length = 558
Score = 82.4 bits (202), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWFMHCH EVHT+WGLKMAF+V+NGK P++++ PPP DLP+C
Sbjct: 516 GVWFMHCHLEVHTTWGLKMAFLVENGKGPNQSIRPPPSDLPKC 558
>AT5G03260.1 | chr5:777198-779338 REVERSE LENGTH=558
Length = 557
Score = 79.7 bits (195), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWFMHCH EVHT WGLKMAFVV+NG+ P +++PPPKD P C
Sbjct: 515 GVWFMHCHLEVHTMWGLKMAFVVENGETPELSVLPPPKDYPSC 557
>AT1G18140.1 | chr1:6238986-6241393 REVERSE LENGTH=582
Length = 581
Score = 78.6 bits (192), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWF+HCH E HTSWGL M F+V +G PS+TL+PPP DLPQC
Sbjct: 539 GVWFIHCHLEQHTSWGLAMGFIVKDGPLPSQTLLPPPHDLPQC 581
>AT5G60020.1 | chr5:24168072-24170223 FORWARD LENGTH=578
Length = 577
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVWFMHCH EVHTSWGL+MA++V +G +P + L+PPP DLP+C
Sbjct: 535 GVWFMHCHLEVHTSWGLRMAWLVLDGDKPDQKLLPPPADLPKC 577
>AT2G29130.1 | chr2:12525189-12527699 REVERSE LENGTH=574
Length = 573
Score = 69.3 bits (168), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW MHCH E+H SWGL MA+VV +G P++ L+PPP D P+C
Sbjct: 531 GVWLMHCHIEIHLSWGLTMAWVVLDGDLPNQKLLPPPSDFPKC 573
>AT5G05390.1 | chr5:1594753-1597042 FORWARD LENGTH=566
Length = 565
Score = 66.6 bits (161), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/43 (65%), Positives = 30/43 (69%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW MHCH +VH WGL MAF+VDNG ETL PP DLP C
Sbjct: 523 GVWLMHCHLDVHIKWGLAMAFLVDNGVGELETLEAPPHDLPIC 565
>AT2G46570.1 | chr2:19126872-19129069 FORWARD LENGTH=570
Length = 569
Score = 65.9 bits (159), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
G+W +HCHF++H +WG+ F+V NGK+ E+L PP DLP+C
Sbjct: 527 GLWLLHCHFDIHQTWGMSTMFIVKNGKKVQESLPHPPADLPKC 569
>AT2G40370.1 | chr2:16858192-16860593 REVERSE LENGTH=581
Length = 580
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW MHCH + H SWGL MAF+V+NG +T+ PP DLP C
Sbjct: 538 GVWIMHCHLDAHISWGLAMAFLVENGNGVLQTIEQPPHDLPVC 580
>AT2G30210.1 | chr2:12887735-12889827 REVERSE LENGTH=571
Length = 570
Score = 60.1 bits (144), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
G WFMHCH + H WGL M F+V+NG+ +++ PP DLP+C
Sbjct: 528 GAWFMHCHIDSHLGWGLAMVFLVENGRGQLQSVQAPPLDLPRC 570
>AT5G09360.1 | chr5:2906426-2908658 REVERSE LENGTH=570
Length = 569
Score = 58.2 bits (139), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW +HCH E H +WG+ F+V +G S ++ PP DLP C
Sbjct: 527 GVWLLHCHIERHATWGMNTVFIVKDGPTKSSRMVKPPPDLPSC 569
>AT5G07130.1 | chr5:2210567-2212525 FORWARD LENGTH=570
Length = 569
Score = 57.8 bits (138), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
G W MHCH + H WGL M F+V+NG+ +++ PP DLPQC
Sbjct: 527 GAWLMHCHIDSHIFWGLAMVFLVENGEGHLQSVQSPPLDLPQC 569
>AT5G01040.1 | chr5:13394-16142 REVERSE LENGTH=585
Length = 584
Score = 56.2 bits (134), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
GVW HCH + H +G+ AF+V NG P +L PP +LPQC
Sbjct: 524 GVWLFHCHMDAHLPYGIMSAFIVQNGPTPETSLPSPPSNLPQC 566
>AT5G01050.1 | chr5:18209-20812 REVERSE LENGTH=587
Length = 586
Score = 51.6 bits (122), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 49
G+W HCH + H G+ MAF+V NG +L PP +LPQC
Sbjct: 526 GIWLFHCHMDAHLPLGIMMAFIVQNGPTRETSLPSPPSNLPQC 568
>AT5G48100.1 | chr5:19489530-19492582 REVERSE LENGTH=566
Length = 565
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 7 GVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETL 39
GVWFMHCH + H +WG+ + F+V NG+ P++ +
Sbjct: 521 GVWFMHCHLDRHQTWGMNVVFIVKNGREPNQQI 553
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,373,593
Number of extensions: 39191
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 17
Length of query: 49
Length of database: 11,106,569
Length adjustment: 23
Effective length of query: 26
Effective length of database: 10,476,001
Effective search space: 272376026
Effective search space used: 272376026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)