Os12g0108000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Laccase (Diphenol oxidase).
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Os12g0108000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Laccase (Diphenol oxidase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.22 | 0.236 | 2.87 | -0.0295 | 0.047 | -3.41 | 0.000742 | 9.63 | 0.071 | 11.6 | 0.882 | 8 | -- | -- |
| 26.19 | 0.238 | 2.86 | -0.0226 | 0.0288 | -0.716 | 0.059 | -- | 0.0587 | 13.1 | 4.002e-05 | 5 | -- | -- |
| 25.22 | 0.234 | 2.87 | -0.0296 | 0.047 | -3.41 | -- | 9.64 | 0.071 | 11.6 | 0.8844 | 7 | -- | -- |
| 26.15 | 0.238 | 2.86 | -0.0178 | 0.0469 | -0.659 | -- | -- | 0.0663 | 10.8 | 0.1033 | 5 | -- | -- |
| 25.36 | 0.235 | 2.87 | -0.0312 | -- | -3.47 | -- | 9.9 | 0.0701 | -- | 0.9395 | 7 | -- | -- |
| 26.71 | 0.242 | 2.86 | -0.00754 | 0.0439 | -- | 0.014 | -- | 0.0615 | 9.99 | -- | -- | -- | -- |
| 26.71 | 0.242 | 2.86 | -0.00707 | 0.044 | -- | -- | -- | 0.0614 | 9.83 | -- | -- | -- | -- |
| 26.29 | 0.239 | 2.86 | -0.0178 | -- | -0.659 | -- | -- | 0.0663 | -- | 0.1033 | 5 | -- | -- |
| 26.16 | 0.238 | 2.86 | -- | 0.0468 | -0.656 | -- | -- | 0.067 | 10.5 | 0.1097 | 5 | -- | -- |
| 26.83 | 0.242 | 2.86 | -0.00753 | -- | -- | -- | -- | 0.0615 | -- | -- | -- | -- | -- |
| 26.71 | 0.242 | 2.86 | -- | 0.0441 | -- | -- | -- | 0.0622 | 9.84 | -- | -- | -- | -- |
| 26.3 | 0.239 | 2.86 | -- | -- | -0.638 | -- | -- | 0.0671 | -- | 0.0691 | 5 | -- | -- |
| 26.83 | 0.242 | 2.86 | -- | -- | -- | -- | -- | 0.0623 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.96 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 4 | 20.96 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 8 | 20.96 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 14 | 20.96 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 15 | 20.96 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 35 | 20.96 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 38 | 20.96 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 41 | 20.99 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 43 | 21.04 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 44 | 21.05 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 45 | 21.07 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 48 | 21.09 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 49 | 21.09 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 51 | 21.09 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 55 | 21.13 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 56 | 21.14 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 62 | 21.15 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 64 | 21.15 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 65 | 21.15 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 68 | 21.15 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 70 | 21.15 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 72 | 21.15 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 77 | 21.15 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 78 | 21.15 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 79 | 21.15 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 80 | 21.15 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 86 | 21.15 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 87 | 21.17 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 90 | 21.21 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 97 | 21.38 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 98 | 21.40 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 103 | 21.62 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 104 | 21.68 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 116 | 22.00 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 166 | 24.09 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 1 | 1 |
| 178 | 24.09 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 196 | 24.14 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 199 | 24.14 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 290 | 24.74 | precipitation | 0.1 | 10 | > th | dose independent | sin | 14 | NA |
| 292 | 24.74 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 293 | 24.74 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 295 | 24.75 | precipitation | 0.1 | 10 | < th | dose independent | sin | 14 | NA |
| 296 | 24.75 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 14 | NA |
| 327 | 24.81 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 14 | NA |
| 360 | 24.94 | temperature | 20.0 | 720 | < th | dose independent | rect. | 15 | 1 |
| 400 | 24.99 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 438 | 25.06 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 441 | 25.13 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 529 | 25.19 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 553 | 25.19 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 22 |
| 588 | 25.22 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 739 | 25.30 | precipitation | 0.1 | 10 | > th | dose independent | no | NA | NA |
| 740 | 25.30 | precipitation | 0.1 | 10 | < th | dose independent | no | NA | NA |
| 796 | 25.30 | precipitation | 0.1 | 10 | < th | dose dependent | no | NA | NA |
| 825 | 25.31 | precipitation | 0.1 | 10 | > th | dose dependent | no | NA | NA |
| 886 | 25.36 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 901 | 25.38 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 2 | 8 |
| 934 | 25.42 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 938 | 25.44 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 943 | 25.47 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 964 | 25.49 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 966 | 25.50 | humidity | 90.0 | 90 | > th | dose independent | rect. | 24 | 1 |
| 992 | 25.56 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 1 | 10 |