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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0850700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.6 (0.13) R2 : 0.508
β1 : -9.98 (0.641) R2dD : 0.592 R2D : 0.188
β2 : 1.56 (0.302) R2dC : 0.0288 R2C : -0.0158
β3 : 5.86 (0.499) R2dE : 0.18 R2E : -0.0217
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.2 (2.76) R2dD*E : 0.0273 R2D*E : -0.187
γ1 : -2.7 (0.293) R2dN8 : 0.163 R2N8 : -0.0744
σ : 2.22
deviance : 2276.86
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_____
C
peak time of C : 3.84
E
wheather : temperature
threshold : 18.6
memory length : 296
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.1
open length of G : 18.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2276.34 2.24 7.6 -10.1 1.7 5.87 -1.23 -9.97 -2.72 3.62 19.14 297 14 19
2333.64 2.25 7.48 -8.72 1.6 5.65 -1.55 -- -2.35 3.22 18.61 306 14.1 19
2276.86 2.22 7.6 -9.98 1.56 5.86 -- -9.2 -2.7 3.84 18.6 296 14.1 18.8
2335.48 2.25 7.44 -8.51 1.45 5.62 -- -- -2.28 3.7 17.97 290 14.2 18.8
2302.78 2.23 7.58 -9.68 -- 5.76 -- -9.85 -2.61 -- 17.17 188 15.8 16.8
2812.91 2.49 7.28 -7.58 2.27 -- -1.98 -- -1.44 1 -- -- -- --
2829.27 2.49 7.27 -7.51 2.27 -- -- -- -1.43 0.996 -- -- -- --
2337.12 2.25 7.43 -8.26 -- 5.36 -- -- -2.21 -- 17.3 155 16.4 16.4
4116.36 2.99 7.14 -- 1.44 3.44 -- -- -0.768 1.46 20.01 238 14.9 17.2
3151.04 2.62 7.24 -7.42 -- -- -- -- -1.39 -- -- -- -- --
4315.88 3.07 7.08 -- 2.15 -- -- -- -0.593 0.848 -- -- -- --
4077.2 2.97 7.21 -- -- 3.8 -- -- -1.02 -- 11.9 126 16.6 16.3
4605.27 3.17 7.05 -- -- -- -- -- -0.562 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2302.67 wind 9 43200 < th dose independent rect. 18 21
2 2302.67 temperature 20 270 > th dose dependent rect. 14 19
3 2303.77 wind 9 43200 > th dose independent rect. 17 22
5 2305.85 wind 7 43200 > th dose dependent rect. 18 21
7 2306.22 wind 7 43200 > th dose dependent rect. 20 19
9 2306.81 wind 9 43200 < th dose independent rect. 20 19
13 2308.36 wind 9 43200 > th dose independent rect. 20 19
32 2315.14 wind 7 43200 > th dose dependent rect. 6 9
40 2316.61 wind 7 43200 > th dose dependent rect. 2 13
45 2316.95 wind 7 43200 > th dose dependent rect. 23 17
60 2318.83 wind 9 43200 < th dose independent rect. 13 23
64 2319.00 wind 9 43200 > th dose independent rect. 13 23
70 2320.40 wind 7 43200 > th dose dependent rect. 4 20
72 2320.63 wind 7 43200 > th dose dependent rect. 2 22
77 2320.90 wind 7 43200 > th dose dependent rect. 23 23
78 2320.92 wind 7 43200 > th dose dependent sin 2 NA
81 2321.10 wind 7 43200 > th dose dependent rect. 13 23
88 2321.75 wind 9 43200 < th dose independent rect. 22 23
89 2321.79 wind 7 43200 > th dose dependent no NA NA
99 2322.28 wind 9 43200 > th dose independent rect. 22 23
109 2322.60 wind 9 43200 > th dose independent rect. 4 23
112 2322.72 wind 9 43200 > th dose independent rect. 2 23
115 2322.85 wind 9 43200 > th dose independent rect. 4 21
128 2323.21 wind 9 43200 > th dose independent no NA NA
140 2323.51 wind 9 43200 < th dose independent rect. 4 20
144 2323.56 wind 9 43200 > th dose independent rect. 11 23
147 2323.65 wind 9 43200 < th dose independent rect. 2 22
155 2323.82 wind 9 43200 < th dose independent rect. 4 23
176 2324.22 wind 9 43200 > th dose independent rect. 2 19
186 2324.33 wind 9 43200 < th dose independent no NA NA
189 2324.44 wind 9 43200 > th dose independent rect. 4 17
195 2324.62 wind 9 43200 < th dose independent rect. 2 19
202 2324.70 wind 9 43200 < th dose independent rect. 4 17
225 2325.22 temperature 20 90 > th dose dependent rect. 17 16
226 2325.27 wind 9 43200 > th dose dependent rect. 13 19
253 2326.45 wind 9 43200 > th dose dependent rect. 11 21
317 2329.82 wind 9 43200 < th dose independent rect. 22 17
334 2331.15 wind 9 43200 > th dose dependent sin 18 NA
358 2332.57 wind 9 43200 < th dose independent rect. 7 8
360 2332.86 wind 9 43200 < th dose independent rect. 5 10
365 2333.45 wind 9 43200 < th dose independent rect. 1 14
406 2336.92 wind 9 43200 < th dose independent sin 1 NA
410 2337.43 wind 9 43200 > th dose dependent rect. 10 15
413 2337.52 wind 9 43200 > th dose dependent rect. 10 17
427 2338.50 wind 9 43200 > th dose independent sin 0 NA
437 2339.12 wind 9 43200 > th dose independent rect. 7 8
475 2343.02 temperature 25 1440 > th dose dependent rect. 16 7
477 2343.10 temperature 25 1440 > th dose dependent rect. 16 15
492 2343.75 radiation 10 43200 > th dose independent rect. 9 2
535 2345.33 temperature 25 1440 > th dose dependent rect. 18 2
547 2345.73 atmosphere 1000 43200 < th dose dependent rect. 14 2
557 2346.07 wind 9 43200 > th dose dependent sin 14 NA
651 2350.25 wind 9 43200 < th dose independent rect. 9 5
723 2353.95 temperature 25 1440 > th dose dependent sin 13 NA
730 2354.37 wind 9 43200 > th dose independent rect. 9 5
890 2360.96 wind 9 43200 > th dose independent sin 13 NA
961 2363.96 atmosphere 1000 43200 < th dose independent rect. 14 1