BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0703400 Os11g0703400|AK073930
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0703400 Snf7 family protein 347 3e-96
Os07g0236800 Snf7 family protein 289 1e-78
Os03g0639800 Snf7 family protein 143 1e-34
Os10g0476400 Snf7 family protein 137 5e-33
Os03g0108400 Snf7 family protein 66 3e-11
>Os11g0703400 Snf7 family protein
Length = 224
Score = 347 bits (891), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 182/224 (81%), Positives = 182/224 (81%)
Query: 1 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVK 60
MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVK
Sbjct: 1 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVK 60
Query: 61 IMAKDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLP 120
IMAKDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLP
Sbjct: 61 IMAKDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLP 120
Query: 121 ALQKIMREFEIQNEKMEIVSSTMNDAIDDALXXXXXXXXXXXLVNQVLDEIGIDVNSELV 180
ALQKIMREFEIQNEKMEIVSSTMNDAIDDAL LVNQVLDEIGIDVNSELV
Sbjct: 121 ALQKIMREFEIQNEKMEIVSSTMNDAIDDALEGDEEEEETEELVNQVLDEIGIDVNSELV 180
Query: 181 GAPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLDNLRKM 224
GAPST RLDNLRKM
Sbjct: 181 GAPSTAVAAPVGAGKVAAQAEAAGGGDGGIDDDLQARLDNLRKM 224
>Os07g0236800 Snf7 family protein
Length = 225
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/181 (80%), Positives = 157/181 (86%), Gaps = 1/181 (0%)
Query: 1 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVK 60
MSF+FGKRKTPAELLRENKRMLD+SIREIERERQGLQAQEKKLI EIKK AK+GQMGAVK
Sbjct: 1 MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK 60
Query: 61 IMAKDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLP 120
+MAKDLIRTRHQITKFY LKSQLQGVSLR+QTLKSTQAMG+AMKGVTKAM QMNRQ+NLP
Sbjct: 61 VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLP 120
Query: 121 ALQKIMREFEIQNEKMEIVSSTMNDAIDDAL-XXXXXXXXXXXLVNQVLDEIGIDVNSEL 179
LQ+IM EFE QNE+ME+ S M DAIDDAL LVNQVLDEIGID+N EL
Sbjct: 121 GLQRIMMEFERQNERMEMTSEVMGDAIDDALEGDEDQEEETEELVNQVLDEIGIDINQEL 180
Query: 180 V 180
V
Sbjct: 181 V 181
>Os03g0639800 Snf7 family protein
Length = 229
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/180 (42%), Positives = 109/180 (60%)
Query: 4 IFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMA 63
IF K+ P E LR +KR + + R +ERE LQ +EKKL+AEIKK AK G A KI+A
Sbjct: 3 IFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKILA 62
Query: 64 KDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLPALQ 123
+ L+R R QI ++Q++GV+ Q + + ++ MKG +KAM MN+QM
Sbjct: 63 RQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSISAGMKGASKAMAAMNKQMEPTKQI 122
Query: 124 KIMREFEIQNEKMEIVSSTMNDAIDDALXXXXXXXXXXXLVNQVLDEIGIDVNSELVGAP 183
K+MREF+ Q+ ++++ M+DAID+ L L NQVLDEIG+DV S+L AP
Sbjct: 123 KVMREFQKQSNQLDMTLEMMSDAIDETLDKDEAEEETEELTNQVLDEIGVDVASQLSSAP 182
>Os10g0476400 Snf7 family protein
Length = 212
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 114/180 (63%), Gaps = 2/180 (1%)
Query: 5 FGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMAK 64
F K+ TP E +R +KR L + R IER+ LQ +EK+L+AEIK+ AK G A +I+A+
Sbjct: 4 FAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEAATRILAR 63
Query: 65 DLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLPALQ- 123
LIR R QI+ ++Q++G++ Q + + ++ M+ +KAM +N+QM+ PA Q
Sbjct: 64 QLIRLRQQISNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMD-PAKQM 122
Query: 124 KIMREFEIQNEKMEIVSSTMNDAIDDALXXXXXXXXXXXLVNQVLDEIGIDVNSELVGAP 183
K+M+EF+ Q+ +M++ + M+D+ID+ L L NQVLDEIG+D+ S+L AP
Sbjct: 123 KVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSSAP 182
>Os03g0108400 Snf7 family protein
Length = 143
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 71/126 (56%)
Query: 4 IFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMA 63
+ + TP + LRE +R L R I+R+ + +Q +EKK+ I++ AK+ +G+ K +A
Sbjct: 7 LLKPKPTPQQQLREWQRRLRNEGRNIDRQIRDVQREEKKVEKSIREAAKRNDIGSAKALA 66
Query: 64 KDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLPALQ 123
K+++R+R + + Y K+QL +S+ + + +T + T+ M+ +N M P +
Sbjct: 67 KEVVRSRKAVNRLYENKAQLNSISMHLGEIVATARTVGHLSKSTEVMKLVNNLMKAPEVA 126
Query: 124 KIMREF 129
M+EF
Sbjct: 127 ATMQEF 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,367,731
Number of extensions: 122032
Number of successful extensions: 604
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 6
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)