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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0476400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Snf7 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0228) R2 : 0.511
β1 : -0.0995 (0.0836) R2dD : 0.00188 R2D : -0.0483
β2 : 0.883 (0.056) R2dC : 0.267 R2C : 0.215
β3 : -3.23 (0.236) R2dE : 0.654 R2E : -0.265
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.98 (0.706) R2dD*E : 0.439 R2D*E : -0.489
γ1 : 0.307 (0.0479) R2dN8 : 0.0599 R2N8 : 0.0488
σ : 0.416
deviance : 79.94
__
_____
C
peak time of C : 3.47
E
wheather : humidity
threshold : 84.99
memory length : 821
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 0.917

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.84 0.417 11.2 -0.0938 0.879 -3.23 0.602 -7.99 0.309 3.51 85 816 12 0.919
101.14 0.468 11.2 -0.052 0.848 -1.08 0.372 -- 0.291 3.5 82.42 819 12 0.58
79.94 0.416 11.2 -0.0995 0.883 -3.23 -- -7.98 0.307 3.47 84.99 821 12 0.917
101.29 0.469 11.2 -0.0457 0.858 -0.96 -- -- 0.288 3.48 82.41 1179 12 0.415
123.12 0.517 11.2 -0.0583 -- -3.17 -- -7.79 0.331 -- 84.88 781 12 0.934
111.43 0.495 11.2 0.109 0.86 -- 0.486 -- 0.342 3.79 -- -- -- --
112.12 0.496 11.2 0.102 0.862 -- -- -- 0.339 3.74 -- -- -- --
142.86 0.557 11.2 -0.00855 -- -1.04 -- -- 0.307 -- 80 727 12 0.833
101.34 0.469 11.2 -- 0.881 -0.936 -- -- 0.29 3.51 82.63 1182 12 0.367
153.16 0.578 11.2 0.138 -- -- -- -- 0.362 -- -- -- -- --
112.4 0.496 11.2 -- 0.864 -- -- -- 0.327 3.74 -- -- -- --
142.79 0.557 11.2 -- -- -1.04 -- -- 0.308 -- 80.86 725 12 0.825
153.66 0.579 11.2 -- -- -- -- -- 0.346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.77 humidity 80.0 720 > th dose dependent rect. 12 1
2 88.04 humidity 80.0 720 > th dose independent rect. 12 1
3 98.11 temperature 25.0 4320 > th dose dependent rect. 5 1
5 99.98 temperature 25.0 4320 > th dose dependent rect. 1 5
7 100.11 temperature 25.0 4320 > th dose dependent rect. 1 3
8 100.17 temperature 25.0 4320 > th dose independent rect. 2 2
19 100.42 temperature 25.0 4320 < th dose independent rect. 2 2
70 101.72 temperature 30.0 90 < th dose independent rect. 24 23
83 102.09 temperature 30.0 270 < th dose independent rect. 24 21
88 102.24 wind 9.0 14400 < th dose independent rect. 20 15
94 102.37 wind 9.0 14400 > th dose independent rect. 20 15
105 102.55 wind 9.0 14400 > th dose dependent rect. 19 16
117 102.74 precipitation 0.1 4320 < th dose independent rect. 14 5
118 102.74 precipitation 0.1 4320 < th dose dependent rect. 14 5
120 102.76 temperature 25.0 10 > th dose dependent rect. 8 12
121 102.79 precipitation 0.1 4320 > th dose independent rect. 14 5
122 102.80 precipitation 0.1 4320 > th dose independent rect. 5 13
127 102.83 precipitation 0.1 4320 < th dose independent rect. 5 13
128 102.83 precipitation 0.1 4320 < th dose dependent rect. 5 13
133 102.88 humidity 60.0 4320 < th dose independent rect. 13 1
139 102.91 precipitation 0.1 4320 > th dose dependent rect. 4 15
154 102.99 precipitation 0.1 4320 > th dose dependent rect. 2 16
157 103.00 temperature 25.0 10 > th dose dependent rect. 4 16
161 103.00 precipitation 0.1 14400 > th dose dependent rect. 20 22
227 103.23 humidity 60.0 4320 > th dose independent rect. 13 2
239 103.26 precipitation 0.1 14400 > th dose dependent rect. 8 10
264 103.32 humidity 60.0 4320 > th dose independent rect. 11 4
269 103.33 precipitation 0.1 14400 > th dose dependent rect. 16 2
276 103.34 precipitation 0.1 14400 > th dose dependent rect. 14 4
289 103.36 radiation 1.0 43200 < th dose dependent rect. 24 1
294 103.37 wind 9.0 14400 < th dose independent rect. 20 9
295 103.37 wind 9.0 14400 > th dose independent rect. 19 11
335 103.43 temperature 30.0 720 < th dose independent rect. 24 12
338 103.43 precipitation 0.1 14400 > th dose dependent rect. 17 10
373 103.48 radiation 10.0 43200 > th dose independent rect. 8 5
384 103.50 radiation 10.0 43200 < th dose dependent rect. 12 1
386 103.50 wind 9.0 14400 > th dose dependent rect. 19 11
396 103.51 temperature 25.0 90 > th dose dependent sin 0 NA
417 103.55 precipitation 0.1 14400 > th dose dependent rect. 17 5
427 103.56 radiation 10.0 43200 < th dose independent rect. 12 1
449 103.58 temperature 25.0 10 > th dose dependent rect. 8 21
450 103.59 temperature 10.0 90 > th dose dependent sin 23 NA
470 103.61 temperature 30.0 90 < th dose independent rect. 11 11
473 103.61 precipitation 0.1 14400 > th dose dependent rect. 14 8
477 103.61 precipitation 0.1 14400 > th dose dependent rect. 5 17
486 103.62 precipitation 0.1 14400 > th dose dependent rect. 5 21
502 103.64 radiation 40.0 43200 < th dose independent rect. 10 1
509 103.65 temperature 20.0 14400 < th dose independent rect. 21 1
522 103.66 temperature 30.0 720 < th dose independent rect. 9 3
529 103.66 precipitation 0.1 14400 > th dose dependent rect. 8 18
534 103.67 precipitation 0.1 14400 > th dose dependent rect. 8 14
567 103.70 temperature 30.0 270 < th dose independent rect. 9 11
592 103.72 radiation 40.0 43200 > th dose independent rect. 10 1
594 103.72 radiation 30.0 43200 > th dose dependent rect. 10 1
604 103.73 wind 1.0 14400 < th dose dependent rect. 1 3
625 103.76 temperature 30.0 720 < th dose independent rect. 11 1
628 103.76 precipitation 0.1 14400 > th dose dependent sin 17 NA
637 103.77 radiation 10.0 43200 > th dose independent rect. 8 2
679 103.79 precipitation 0.1 14400 > th dose dependent rect. 17 19
696 103.81 radiation 10.0 43200 > th dose independent rect. 10 3
717 103.82 precipitation 0.1 14400 > th dose dependent rect. 17 13
724 103.83 temperature 20.0 14400 > th dose independent rect. 21 1
748 103.85 temperature 25.0 10 > th dose dependent no NA NA
751 103.85 precipitation 0.1 14400 > th dose dependent rect. 17 16
829 103.91 wind 9.0 14400 < th dose independent rect. 19 6
893 103.95 temperature 25.0 10 > th dose dependent rect. 17 23
935 103.99 radiation 20.0 43200 < th dose dependent rect. 10 1
943 103.99 precipitation 0.1 14400 > th dose dependent rect. 24 22
955 104.00 temperature 25.0 30 > th dose dependent rect. 15 23