BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0476400 Os10g0476400|AK072826
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0476400 Snf7 family protein 387 e-108
Os03g0639800 Snf7 family protein 257 4e-69
Os11g0703400 Snf7 family protein 113 1e-25
Os07g0236800 Snf7 family protein 110 1e-24
>Os10g0476400 Snf7 family protein
Length = 212
Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/212 (91%), Positives = 195/212 (91%)
Query: 1 MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEXXXXX 60
MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNE
Sbjct: 1 MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEAATRI 60
Query: 61 XXXXXXXXXXXXSNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK 120
SNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK
Sbjct: 61 LARQLIRLRQQISNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK 120
Query: 121 QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS 180
QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS
Sbjct: 121 QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS 180
Query: 181 APKGRITGKKVQADESSELDELEKRLAALKNP 212
APKGRITGKKVQADESSELDELEKRLAALKNP
Sbjct: 181 APKGRITGKKVQADESSELDELEKRLAALKNP 212
>Os03g0639800 Snf7 family protein
Length = 229
Score = 257 bits (656), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/227 (60%), Positives = 171/227 (75%), Gaps = 17/227 (7%)
Query: 1 MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEXXXXX 60
MN F KK P+EA+R+SKRE++ ATRG+ER+IG+LQ+EEK+LVAEIK+TAKTGNE
Sbjct: 1 MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKI 60
Query: 61 XXXXXXXXXXXXSNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK 120
NLQG+RAQIRG+ATHTQAM+A TS++AGM+ ASKAM A+NKQM+P K
Sbjct: 61 LARQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSISAGMKGASKAMAAMNKQMEPTK 120
Query: 121 QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS 180
Q+KVM+EFQKQS Q+DMT EMMSD+ID LD D+AEEETE+L NQVLDEIGVD+ASQLSS
Sbjct: 121 QIKVMREFQKQSNQLDMTLEMMSDAIDETLDKDEAEEETEELTNQVLDEIGVDVASQLSS 180
Query: 181 APKGRITG-----------------KKVQADESSELDELEKRLAALK 210
APKGRI V+ + S+E+D+LE+RLA+L+
Sbjct: 181 APKGRIAASNRKAESNQARNAAPPRNNVEPESSAEVDDLERRLASLR 227
>Os11g0703400 Snf7 family protein
Length = 224
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 111/180 (61%), Gaps = 2/180 (1%)
Query: 4 FAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEXXXXXXXX 63
F K+ TP E +R +KR L + R IER+ LQ +EK+L+AEIK+ AK G
Sbjct: 5 FGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMAK 64
Query: 64 XXXXXXXXXSNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMD-PAKQM 122
+ ++Q++G++ Q + + ++ M+ +KAM +N+QM+ PA Q
Sbjct: 65 DLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLPALQ- 123
Query: 123 KVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSSAP 182
K+M+EF+ Q+ +M++ + M+D+ID+ L+ D+ EEETE+L NQVLDEIG+D+ S+L AP
Sbjct: 124 KIMREFEIQNEKMEIVSSTMNDAIDDALEGDEEEEETEELVNQVLDEIGIDVNSELVGAP 183
>Os07g0236800 Snf7 family protein
Length = 225
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 107/176 (60%), Gaps = 1/176 (0%)
Query: 4 FAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEXXXXXXXX 63
F K+ TP E +R +KR L + R IER+ LQ +EK+L+ EIK+TAK G
Sbjct: 5 FGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMAK 64
Query: 64 XXXXXXXXXSNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAKQMK 123
+ ++Q++G++ Q + + ++ M+ +KAMG +N+Q++ +
Sbjct: 65 DLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGLQR 124
Query: 124 VMQEFQKQSAQMDMTNEMMSDSIDNIL-DDDQAEEETEDLANQVLDEIGVDIASQL 178
+M EF++Q+ +M+MT+E+M D+ID+ L D+ EEETE+L NQVLDEIG+DI +L
Sbjct: 125 IMMEFERQNERMEMTSEVMGDAIDDALEGDEDQEEETEELVNQVLDEIGIDINQEL 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.307 0.121 0.310
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,141,999
Number of extensions: 161570
Number of successful extensions: 886
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 880
Number of HSP's successfully gapped: 4
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 154 (63.9 bits)