Os03g0639800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0639800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Snf7 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.3 | 0.631 | 5.87 | -1.58 | 0.156 | -1.76 | 0.109 | 0.348 | -0.286 | 11.2 | 24.6 | 4513 | -- | -- |
| 180.37 | 0.626 | 5.86 | -1.49 | 0.161 | -1.77 | 0.136 | -- | -0.272 | 11.2 | 24.6 | 4457 | -- | -- |
| 180.34 | 0.625 | 5.87 | -1.58 | 0.157 | -1.76 | -- | 0.349 | -0.286 | 10.7 | 24.6 | 4512 | -- | -- |
| 180.42 | 0.626 | 5.86 | -1.49 | 0.161 | -1.76 | -- | -- | -0.27 | 11.1 | 24.5 | 4455 | -- | -- |
| 181.85 | 0.628 | 5.87 | -1.57 | -- | -1.74 | -- | 0.332 | -0.282 | -- | 24.6 | 4512 | -- | -- |
| 258.55 | 0.754 | 5.76 | -0.759 | 0.111 | -- | -0.522 | -- | 0.157 | 6.36 | -- | -- | -- | -- |
| 258.9 | 0.753 | 5.76 | -0.763 | 0.13 | -- | -- | -- | 0.16 | 8.64 | -- | -- | -- | -- |
| 181.93 | 0.628 | 5.86 | -1.48 | -- | -1.73 | -- | -- | -0.255 | -- | 24.54 | 4512 | -- | -- |
| 227.58 | 0.703 | 5.81 | -- | 0.147 | -1.28 | -- | -- | -0.0645 | 11.2 | 24.7 | 3049 | -- | -- |
| 259.85 | 0.753 | 5.76 | -0.762 | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
| 274.23 | 0.775 | 5.74 | -- | 0.128 | -- | -- | -- | 0.245 | 9.09 | -- | -- | -- | -- |
| 229.02 | 0.705 | 5.81 | -- | -- | -1.27 | -- | -- | -0.0674 | -- | 24.7 | 3049 | -- | -- |
| 275.18 | 0.774 | 5.74 | -- | -- | -- | -- | -- | 0.246 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.37 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 3 | 167.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 8 | 168.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 26 | 171.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 48 | 173.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 93 | 176.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 98 | 176.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 99 | 176.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 133 | 177.82 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 165 | 178.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 167 | 178.56 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 183 | 178.75 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 186 | 178.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 203 | 179.11 | temperature | 20 | 4320 | > th | dose dependent | sin | 7 | NA |
| 226 | 179.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 273 | 179.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 6 |
| 334 | 180.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 348 | 180.20 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 361 | 180.25 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 7 |
| 380 | 180.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 391 | 180.35 | temperature | 10 | 4320 | > th | dose dependent | sin | 7 | NA |
| 394 | 180.36 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 490 | 180.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 497 | 180.65 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 530 | 180.70 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 565 | 180.77 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 590 | 180.81 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 594 | 180.83 | temperature | 30 | 4320 | < th | dose dependent | sin | 7 | NA |
| 601 | 180.84 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 661 | 180.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 686 | 181.01 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 789 | 181.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 17 |
| 868 | 181.39 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 880 | 181.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 961 | 181.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 23 |