BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0639800 Os03g0639800|AK103237
(229 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0639800 Snf7 family protein 361 e-100
Os10g0476400 Snf7 family protein 258 4e-69
Os11g0703400 Snf7 family protein 117 6e-27
Os07g0236800 Snf7 family protein 103 9e-23
>Os03g0639800 Snf7 family protein
Length = 229
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/229 (82%), Positives = 188/229 (82%)
Query: 1 MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKI 60
MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKI
Sbjct: 1 MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKI 60
Query: 61 LARQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSIXXXXXXXXXXXXXXNKQMEPTK 120
LARQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSI NKQMEPTK
Sbjct: 61 LARQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSISAGMKGASKAMAAMNKQMEPTK 120
Query: 121 QIKVMREFQKQSNQLDMTLEMMSDAIXXXXXXXXXXXXXXXXXNQVLDEIGVDVASQLSS 180
QIKVMREFQKQSNQLDMTLEMMSDAI NQVLDEIGVDVASQLSS
Sbjct: 121 QIKVMREFQKQSNQLDMTLEMMSDAIDETLDKDEAEEETEELTNQVLDEIGVDVASQLSS 180
Query: 181 APKGRIAASNRKAESNQXXXXXXXXXXVEPESSAEVDDLERRLASLRRI 229
APKGRIAASNRKAESNQ VEPESSAEVDDLERRLASLRRI
Sbjct: 181 APKGRIAASNRKAESNQARNAAPPRNNVEPESSAEVDDLERRLASLRRI 229
>Os10g0476400 Snf7 family protein
Length = 212
Score = 258 bits (658), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 132/227 (58%), Positives = 163/227 (71%), Gaps = 17/227 (7%)
Query: 1 MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKI 60
MN F KK P+EA+R+SKRE++ ATRG+ER+IG+LQ+EEK+LVAEIK+TAKTGNEAAT+I
Sbjct: 1 MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEAATRI 60
Query: 61 LARQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSIXXXXXXXXXXXXXXNKQMEPTK 120
LARQL+RLRQQI NLQG+RAQIRG+ATHTQAM+A TS+ NKQM+P K
Sbjct: 61 LARQLIRLRQQISNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK 120
Query: 121 QIKVMREFQKQSNQLDMTLEMMSDAIXXXXXXXXXXXXXXXXXNQVLDEIGVDVASQLSS 180
Q+KVM+EFQKQS Q+DMT EMMSD+I NQVLDEIGVD+ASQLSS
Sbjct: 121 QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS 180
Query: 181 APKGRIAASNRKAESNQXXXXXXXXXXVEPESSAEVDDLERRLASLR 227
APKGRI V+ + S+E+D+LE+RLA+L+
Sbjct: 181 APKGRITG-----------------KKVQADESSELDELEKRLAALK 210
>Os11g0703400 Snf7 family protein
Length = 224
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 100/186 (53%)
Query: 3 IFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKILA 62
IF K+ P E LR +KR + + R +ERE LQ +EKKL+AEIKK AK G A KI+A
Sbjct: 4 IFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVKIMA 63
Query: 63 RQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSIXXXXXXXXXXXXXXNKQMEPTKQI 122
+ L+R R QI ++Q++GV+ Q + + ++ N+QM
Sbjct: 64 KDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLPALQ 123
Query: 123 KVMREFQKQSNQLDMTLEMMSDAIXXXXXXXXXXXXXXXXXNQVLDEIGVDVASQLSSAP 182
K+MREF+ Q+ ++++ M+DAI NQVLDEIG+DV S+L AP
Sbjct: 124 KIMREFEIQNEKMEIVSSTMNDAIDDALEGDEEEEETEELVNQVLDEIGIDVNSELVGAP 183
Query: 183 KGRIAA 188
+AA
Sbjct: 184 STAVAA 189
>Os07g0236800 Snf7 family protein
Length = 225
Score = 103 bits (257), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 3 IFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKILA 62
+F K+ P E LR +KR + + R +ERE LQ +EKKL+ EIKKTAK G A K++A
Sbjct: 4 LFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMA 63
Query: 63 RQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSIXXXXXXXXXXXXXXNKQMEPTKQI 122
+ L+R R QI ++Q++GV+ Q + + ++ N+Q+
Sbjct: 64 KDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGLQ 123
Query: 123 KVMREFQKQSNQLDMTLEMMSDAI-XXXXXXXXXXXXXXXXXNQVLDEIGVDVASQL 178
++M EF++Q+ +++MT E+M DAI NQVLDEIG+D+ +L
Sbjct: 124 RIMMEFERQNERMEMTSEVMGDAIDDALEGDEDQEEETEELVNQVLDEIGIDINQEL 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.124 0.311
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,406,578
Number of extensions: 113538
Number of successful extensions: 328
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 4
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)