Os07g0236800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
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Os07g0236800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Snf7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.87 | 0.257 | 11.5 | -1.61 | 0.184 | 0.495 | 0.262 | -1.67 | -0.258 | 5.73 | 15.94 | 1337 | -- | -- |
| 32.27 | 0.265 | 11.5 | -1.3 | 0.195 | 0.51 | 0.171 | -- | -0.172 | 5.59 | 12.09 | 5699 | -- | -- |
| 30.03 | 0.255 | 11.5 | -1.59 | 0.184 | 0.498 | -- | -1.63 | -0.255 | 6.03 | 15.97 | 1309 | -- | -- |
| 32.34 | 0.265 | 11.5 | -1.3 | 0.195 | 0.508 | -- | -- | -0.173 | 5.56 | 10.6 | 5704 | -- | -- |
| 31.79 | 0.263 | 11.5 | -1.58 | -- | 0.53 | -- | -1.59 | -0.25 | -- | 15.66 | 1306 | -- | -- |
| 36.54 | 0.283 | 11.4 | -1.06 | 0.207 | -- | 0.17 | -- | -0.0628 | 5.36 | -- | -- | -- | -- |
| 36.61 | 0.283 | 11.4 | -1.06 | 0.208 | -- | -- | -- | -0.0636 | 5.37 | -- | -- | -- | -- |
| 34.26 | 0.273 | 11.5 | -1.3 | -- | 0.525 | -- | -- | -0.171 | -- | 9.959 | 5634 | -- | -- |
| 48.24 | 0.323 | 11.4 | -- | 0.21 | -0.68 | -- | -- | 0.257 | 5.19 | 4.573 | 47520 | -- | -- |
| 38.87 | 0.291 | 11.4 | -1.05 | -- | -- | -- | -- | -0.0584 | -- | -- | -- | -- | -- |
| 66.1 | 0.38 | 11.4 | -- | 0.191 | -- | -- | -- | 0.0542 | 5.59 | -- | -- | -- | -- |
| 49.62 | 0.328 | 11.4 | -- | -- | -0.646 | -- | -- | 0.281 | -- | 18.12 | 47520 | -- | -- |
| 67.99 | 0.385 | 11.4 | -- | -- | -- | -- | -- | 0.0581 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 2 | 28.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 6 | 28.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 8 | 28.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 15 | 28.82 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 18 | 28.85 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 19 | 28.85 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 23 | 28.90 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 28 | 28.95 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 42 | 29.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 50 | 29.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 52 | 29.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 59 | 29.12 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 60 | 29.12 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 72 | 29.16 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 77 | 29.18 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 78 | 29.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 83 | 29.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 84 | 29.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 93 | 29.22 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 104 | 29.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 106 | 29.25 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 119 | 29.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 143 | 29.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 161 | 29.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 204 | 29.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 211 | 29.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 262 | 29.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 315 | 29.51 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 334 | 29.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 367 | 29.56 | temperature | 15 | 1440 | > th | dose dependent | sin | 16 | NA |
| 389 | 29.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 417 | 29.60 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 420 | 29.60 | wind | 9 | 43200 | > th | dose dependent | sin | 13 | NA |
| 458 | 29.63 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 521 | 29.67 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 523 | 29.67 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 542 | 29.68 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 640 | 29.74 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 727 | 29.78 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 728 | 29.78 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 779 | 29.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 797 | 29.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 807 | 29.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 941 | 29.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 980 | 29.90 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 981 | 29.90 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |