BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0236800 Os07g0236800|AK071087
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0236800 Snf7 family protein 329 1e-90
Os11g0703400 Snf7 family protein 286 1e-77
Os10g0476400 Snf7 family protein 127 4e-30
Os03g0639800 Snf7 family protein 125 2e-29
Os03g0108400 Snf7 family protein 65 3e-11
>Os07g0236800 Snf7 family protein
Length = 225
Score = 329 bits (843), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/225 (78%), Positives = 176/225 (78%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK 60
MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK
Sbjct: 1 MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK 60
Query: 61 VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLP 120
VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLP
Sbjct: 61 VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLP 120
Query: 121 GLQRIMMEFERQNERMEMTSEVMGDAIXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQEL 180
GLQRIMMEFERQNERMEMTSEVMGDAI LVNQVLDEIGIDINQEL
Sbjct: 121 GLQRIMMEFERQNERMEMTSEVMGDAIDDALEGDEDQEEETEELVNQVLDEIGIDINQEL 180
Query: 181 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQARLDNLRRM 225
V LQARLDNLRRM
Sbjct: 181 VKAPSAAVAQPAAAGKVAQAESAGGNGDGGIDADLQARLDNLRRM 225
>Os11g0703400 Snf7 family protein
Length = 224
Score = 286 bits (731), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/225 (67%), Positives = 164/225 (72%), Gaps = 1/225 (0%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK 60
MSF+FGKRKTPAELLRENKRMLD+SIREIERERQGLQAQEKKLI EIKK AK+GQMGAVK
Sbjct: 1 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLIAEIKKVAKQGQMGAVK 60
Query: 61 VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLP 120
+MAKDLIRTRHQITKFY LKSQLQGVSLR+QTLKSTQAMG+AMKGVTKAM QMNRQ+NLP
Sbjct: 61 IMAKDLIRTRHQITKFYALKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMRQMNRQMNLP 120
Query: 121 GLQRIMMEFERQNERMEMTSEVMGDAIXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQEL 180
LQ+IM EFE QNE+ME+ S M DAI LVNQVLDEIGID+N EL
Sbjct: 121 ALQKIMREFEIQNEKMEIVSSTMNDAI-DDALEGDEEEEETEELVNQVLDEIGIDVNSEL 179
Query: 181 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQARLDNLRRM 225
V LQARLDNLR+M
Sbjct: 180 VGAPSTAVAAPVGAGKVAAQAEAAGGGDGGIDDDLQARLDNLRKM 224
>Os10g0476400 Snf7 family protein
Length = 212
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 108/176 (61%), Gaps = 1/176 (0%)
Query: 5 FGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMAK 64
F K+ TP E +R +KR L + R IER+ LQ +EK+L+ EIK+TAK G A +++A+
Sbjct: 4 FAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEAATRILAR 63
Query: 65 DLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGLQR 124
LIR R QI+ ++Q++G++ Q + + ++ M+ +KAMG +N+Q++ +
Sbjct: 64 QLIRLRQQISNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAKQMK 123
Query: 125 IMMEFERQNERMEMTSEVMGDAIXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQEL 180
+M EF++Q+ +M+MT+E+M D+I L NQVLDEIG+DI +L
Sbjct: 124 VMQEFQKQSAQMDMTNEMMSDSI-DNILDDDQAEEETEDLANQVLDEIGVDIASQL 178
>Os03g0639800 Snf7 family protein
Length = 229
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 4 LFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMA 63
+F K+ P E LR +KR + + R +ERE LQ +EKKL+ EIKKTAK G A K++A
Sbjct: 3 IFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKILA 62
Query: 64 KDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGLQ 123
+ L+R R QI ++Q++GV+ Q + + ++ MKG +KAM MN+Q+
Sbjct: 63 RQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSISAGMKGASKAMAAMNKQMEPTKQI 122
Query: 124 RIMMEFERQNERMEMTSEVMGDAIXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQEL 180
++M EF++Q+ +++MT E+M DAI L NQVLDEIG+D+ +L
Sbjct: 123 KVMREFQKQSNQLDMTLEMMSDAI-DETLDKDEAEEETEELTNQVLDEIGVDVASQL 178
>Os03g0108400 Snf7 family protein
Length = 143
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 71/129 (55%)
Query: 4 LFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMA 63
L + TP + LRE +R L R I+R+ + +Q +EKK+ I++ AK +G+ K +A
Sbjct: 7 LLKPKPTPQQQLREWQRRLRNEGRNIDRQIRDVQREEKKVEKSIREAAKRNDIGSAKALA 66
Query: 64 KDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGLQ 123
K+++R+R + + Y+ K+QL +S+ + + +T + T+ M +N + P +
Sbjct: 67 KEVVRSRKAVNRLYENKAQLNSISMHLGEIVATARTVGHLSKSTEVMKLVNNLMKAPEVA 126
Query: 124 RIMMEFERQ 132
M EF ++
Sbjct: 127 ATMQEFSKE 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,175,757
Number of extensions: 114523
Number of successful extensions: 565
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 6
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)