Os11g0703400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
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Os11g0703400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Snf7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.03 | 0.225 | 12 | -0.077 | 0.437 | -0.352 | -0.222 | 1.18 | 0.21 | 21.3 | 19.97 | 1670 | -- | -- |
| 23.28 | 0.225 | 12 | -0.201 | 0.424 | -0.498 | -0.26 | -- | 0.175 | 21.5 | 14.41 | 27605 | -- | -- |
| 23.16 | 0.224 | 12 | -0.073 | 0.421 | -0.305 | -- | 1.15 | 0.216 | 21.3 | 19.8 | 1907 | -- | -- |
| 23.26 | 0.225 | 12 | -0.221 | 0.431 | -0.522 | -- | -- | 0.18 | 21.3 | 14.4 | 27720 | -- | -- |
| 33.19 | 0.268 | 12 | -0.0765 | -- | -0.404 | -- | 0.711 | 0.203 | -- | 19.5 | 2280 | -- | -- |
| 26.53 | 0.241 | 11.9 | 0.137 | 0.428 | -- | -0.146 | -- | 0.281 | 21.3 | -- | -- | -- | -- |
| 26.61 | 0.242 | 11.9 | 0.142 | 0.429 | -- | -- | -- | 0.281 | 21.3 | -- | -- | -- | -- |
| 33.39 | 0.269 | 11.9 | -0.064 | -- | -0.721 | -- | -- | 0.197 | -- | 18.82 | 2294 | -- | -- |
| 23.25 | 0.225 | 11.9 | -- | 0.417 | -0.605 | -- | -- | 0.241 | 21.5 | 16.09 | 8157 | -- | -- |
| 37.35 | 0.286 | 11.9 | 0.144 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 27.14 | 0.244 | 11.9 | -- | 0.429 | -- | -- | -- | 0.265 | 21.4 | -- | -- | -- | -- |
| 33.45 | 0.269 | 11.9 | -- | -- | -0.683 | -- | -- | 0.218 | -- | 18.7 | 2285 | -- | -- |
| 37.89 | 0.287 | 11.9 | -- | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.53 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 2 | 21.57 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 4 | 21.57 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 12 | 10 |
| 6 | 21.59 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 10 | 21.60 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 23 | 21.64 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 30 | 21.65 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 42 | 21.66 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 50 | 21.67 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 62 | 21.72 | wind | 7.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 87 | 21.77 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 116 | 21.80 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 118 | 21.80 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 119 | 21.81 | temperature | 20.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 125 | 21.81 | wind | 5.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 132 | 21.82 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 146 | 21.84 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 156 | 21.87 | temperature | 20.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 175 | 21.89 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 178 | 21.89 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 181 | 21.89 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 187 | 21.90 | wind | 7.0 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 189 | 21.90 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 226 | 21.95 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 302 | 22.03 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 303 | 22.03 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 312 | 22.03 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 313 | 22.03 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 317 | 22.04 | wind | 5.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 333 | 22.05 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 348 | 22.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 357 | 22.07 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 377 | 22.08 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 378 | 22.08 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 379 | 22.08 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 380 | 22.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 388 | 22.08 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 390 | 22.08 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 398 | 22.09 | wind | 5.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 421 | 22.10 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 5 |
| 433 | 22.11 | wind | 9.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 465 | 22.13 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 470 | 22.13 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 492 | 22.15 | wind | 9.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 507 | 22.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 523 | 22.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 530 | 22.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 531 | 22.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 542 | 22.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 552 | 22.18 | wind | 9.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 594 | 22.19 | wind | 5.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 690 | 22.23 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 750 | 22.26 | wind | 5.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 751 | 22.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 762 | 22.26 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 21 | NA |
| 883 | 22.31 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 884 | 22.31 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 908 | 22.31 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 938 | 22.32 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 940 | 22.32 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |