Os03g0108400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Snf7 family protein.
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Os03g0108400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Snf7 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.2 | 0.399 | 2.9 | -0.119 | 0.14 | 0.315 | -0.341 | -1.6 | 0.0867 | 6.57 | 59 | 129 | -- | -- |
| 76.26 | 0.41 | 2.9 | -0.107 | 0.145 | 0.174 | -0.279 | -- | 0.069 | 7.75 | 59 | 129 | -- | -- |
| 72.35 | 0.396 | 2.9 | -0.122 | 0.145 | 0.312 | -- | -1.57 | 0.0869 | 7.79 | 58.75 | 128 | -- | -- |
| 76.36 | 0.407 | 2.9 | -0.119 | 0.163 | 0.207 | -- | -- | 0.0724 | 7.84 | 59 | 119 | -- | -- |
| 73.45 | 0.399 | 2.91 | -0.118 | -- | 0.279 | -- | -1.62 | 0.0872 | -- | 58.59 | 128 | -- | -- |
| 77.18 | 0.412 | 2.9 | -0.1 | 0.142 | -- | -0.28 | -- | 0.0519 | 8.61 | -- | -- | -- | -- |
| 77.42 | 0.412 | 2.9 | -0.109 | 0.142 | -- | -- | -- | 0.0523 | 9.09 | -- | -- | -- | -- |
| 76.42 | 0.409 | 2.9 | -0.104 | -- | 0.339 | -- | -- | 0.0727 | -- | 53 | 16 | -- | -- |
| 76.74 | 0.408 | 2.9 | -- | 0.162 | 0.201 | -- | -- | 0.0851 | 7.89 | 59 | 119 | -- | -- |
| 78.59 | 0.414 | 2.91 | -0.109 | -- | -- | -- | -- | 0.0531 | -- | -- | -- | -- | -- |
| 77.73 | 0.412 | 2.9 | -- | 0.142 | -- | -- | -- | 0.0644 | 9.15 | -- | -- | -- | -- |
| 76.7 | 0.409 | 2.9 | -- | -- | 0.342 | -- | -- | 0.0844 | -- | 53 | 16 | -- | -- |
| 78.91 | 0.415 | 2.9 | -- | -- | -- | -- | -- | 0.0652 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.09 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 5 | 67.17 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 6 | 67.27 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 11 | 67.39 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 14 | 67.47 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 22 | 67.64 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 33 | 67.64 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 44 | 67.94 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 48 | 68.38 | humidity | 60 | 720 | > th | dose independent | rect. | 3 | 8 |
| 49 | 68.53 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 3 |
| 81 | 68.80 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 87 | 69.33 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 13 |
| 90 | 69.61 | humidity | 70 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 95 | 69.88 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 97 | 69.88 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 109 | 70.07 | humidity | 50 | 10 | > th | dose independent | sin | 8 | NA |
| 111 | 70.12 | humidity | 60 | 270 | < th | dose independent | sin | 9 | NA |
| 117 | 70.31 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 119 | 70.35 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 149 | 70.38 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 161 | 70.60 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 200 | 70.63 | humidity | 60 | 270 | > th | dose independent | sin | 9 | NA |
| 201 | 70.64 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 276 | 70.98 | humidity | 50 | 10 | > th | dose independent | rect. | 3 | 23 |
| 318 | 71.01 | humidity | 60 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 333 | 71.04 | humidity | 60 | 30 | < th | dose dependent | sin | 8 | NA |
| 351 | 71.09 | humidity | 60 | 270 | < th | dose dependent | sin | 8 | NA |
| 368 | 71.21 | radiation | 10 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 384 | 71.22 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 23 | NA |
| 708 | 71.52 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 730 | 71.56 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 768 | 71.62 | humidity | 60 | 720 | > th | dose independent | rect. | 20 | 15 |