BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0108400 Os03g0108400|J075060F06
         (143 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0108400  Snf7 family protein                                 259   7e-70
Os07g0479400  Similar to Neuroendocrine differentiation factor     85   2e-17

>Os03g0108400 Snf7 family protein
          Length = 143

 Score =  259 bits (661), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 131/143 (91%), Positives = 131/143 (91%)

Query: 1   MEAVKSLLKPKPTPXXXXXXXXXXXXNEGRNIDRQIRDVQREEKKVEKSIREAAKRNDIG 60
           MEAVKSLLKPKPTP            NEGRNIDRQIRDVQREEKKVEKSIREAAKRNDIG
Sbjct: 1   MEAVKSLLKPKPTPQQQLREWQRRLRNEGRNIDRQIRDVQREEKKVEKSIREAAKRNDIG 60

Query: 61  SAKALAKEVVRSRKAVNRLYENKAQLNSISMHLGEIVATARTVGHLSKSTEVMKLVNNLM 120
           SAKALAKEVVRSRKAVNRLYENKAQLNSISMHLGEIVATARTVGHLSKSTEVMKLVNNLM
Sbjct: 61  SAKALAKEVVRSRKAVNRLYENKAQLNSISMHLGEIVATARTVGHLSKSTEVMKLVNNLM 120

Query: 121 KAPEVAATMQEFSKEMTKVWIMK 143
           KAPEVAATMQEFSKEMTKVWIMK
Sbjct: 121 KAPEVAATMQEFSKEMTKVWIMK 143



>Os07g0479400 Similar to Neuroendocrine differentiation factor
          Length = 87

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 42/44 (95%)

Query: 96  IVATARTVGHLSKSTEVMKLVNNLMKAPEVAATMQEFSKEMTKV 139
           I ATARTVGHLSKS EVMK+VNNLMKAPE+AATMQEFSKEMTKV
Sbjct: 22  ISATARTVGHLSKSAEVMKIVNNLMKAPELAATMQEFSKEMTKV 65



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.124    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,324,776
Number of extensions: 91621
Number of successful extensions: 309
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 5
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)