Os07g0479400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Neuroendocrine differentiation factor.
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Os07g0479400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Neuroendocrine differentiation factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.18 | 0.361 | 3.03 | -0.0384 | 0.103 | 2.68 | -0.453 | 5.23 | 0.0795 | 4.42 | 16.96 | 533 | -- | -- |
| 62.79 | 0.369 | 3 | 0.0185 | 0.0662 | 0.306 | -0.656 | -- | 0.0948 | 3.55 | 17.02 | 3482 | -- | -- |
| 59.63 | 0.36 | 3.03 | -0.0391 | 0.0955 | 2.77 | -- | 5.48 | 0.0764 | 5.18 | 16.6 | 578 | -- | -- |
| 62.88 | 0.369 | 2.99 | 0.098 | 0.107 | 0.309 | -- | -- | 0.164 | 6.68 | 60.67 | 9186 | -- | -- |
| 60.2 | 0.361 | 3.04 | -0.0222 | -- | 2.87 | -- | 5.68 | 0.0844 | -- | 16.59 | 642 | -- | -- |
| 63.67 | 0.374 | 3.01 | -0.0775 | 0.0594 | -- | -0.613 | -- | 0.069 | 3.38 | -- | -- | -- | -- |
| 64.39 | 0.376 | 3.01 | -0.066 | 0.111 | -- | -- | -- | 0.072 | 6.99 | -- | -- | -- | -- |
| 63.49 | 0.371 | 2.99 | 0.106 | -- | 0.311 | -- | -- | 0.168 | -- | 68.99 | 9256 | -- | -- |
| 62.97 | 0.37 | 2.99 | -- | 0.107 | 0.257 | -- | -- | 0.125 | 6.71 | 81.51 | 6307 | -- | -- |
| 65.04 | 0.377 | 3.01 | -0.0637 | -- | -- | -- | -- | 0.074 | -- | -- | -- | -- | -- |
| 64.5 | 0.376 | 3 | -- | 0.111 | -- | -- | -- | 0.0793 | 7.03 | -- | -- | -- | -- |
| 63.56 | 0.371 | 3 | -- | -- | 0.261 | -- | -- | 0.128 | -- | 83.78 | 6354 | -- | -- |
| 65.14 | 0.377 | 3.01 | -- | -- | -- | -- | -- | 0.0811 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 2 | 58.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 9 | 59.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 13 | 59.08 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 14 | 59.08 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 16 | 59.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 19 | 59.10 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 24 | 59.14 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 57 | 59.14 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 73 | 59.14 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 103 | 59.26 | wind | 3 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 108 | 59.34 | temperature | 20 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 115 | 59.37 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 120 | 59.38 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 125 | 59.39 | wind | 1 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 127 | 59.40 | wind | 3 | 4320 | > th | dose dependent | rect. | 2 | 3 |
| 129 | 59.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 10 | 14 |
| 144 | 59.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 153 | 59.53 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 171 | 59.58 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 180 | 59.59 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 185 | 59.60 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 188 | 59.61 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 198 | 59.63 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 211 | 59.65 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 213 | 59.65 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 216 | 59.65 | temperature | 20 | 1440 | < th | dose dependent | sin | 20 | NA |
| 219 | 59.65 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 7 |
| 247 | 59.68 | wind | 1 | 720 | < th | dose independent | rect. | 7 | 1 |
| 277 | 59.71 | wind | 1 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 299 | 59.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 363 | 59.80 | wind | 1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 377 | 59.85 | humidity | 90 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 389 | 59.86 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 425 | 59.94 | radiation | 30 | 90 | > th | dose independent | rect. | 11 | 2 |
| 430 | 59.95 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 519 | 60.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 601 | 60.19 | wind | 9 | 4320 | > th | dose dependent | sin | 7 | NA |
| 657 | 60.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 7 | 13 |
| 692 | 60.27 | wind | 7 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 708 | 60.28 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 749 | 60.30 | temperature | 20 | 4320 | < th | dose dependent | rect. | 7 | 5 |
| 814 | 60.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 7 | 13 |
| 884 | 60.38 | temperature | 20 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 992 | 60.43 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |