BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0479400 Os07g0479400|J100025L14
         (87 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22950.1  | chr5:7681380-7682720 FORWARD LENGTH=230             82   8e-17
AT3G45000.1  | chr3:16460348-16461407 FORWARD LENGTH=201           70   3e-13

>AT5G22950.1 | chr5:7681380-7682720 FORWARD LENGTH=230
          Length = 229

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 43/49 (87%), Gaps = 2/49 (4%)

Query: 24  ATARTVGHLSKSAEVMKIVNNLMKAPELAATMQEFSKEMTK--VIRYFC 70
           A ARTVGHLSKSAEVMK+VNNLMKAP++AATMQEFSKEMTK  VI  F 
Sbjct: 98  AIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFV 146



>AT3G45000.1 | chr3:16460348-16461407 FORWARD LENGTH=201
          Length = 200

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 40/49 (81%), Gaps = 2/49 (4%)

Query: 24  ATARTVGHLSKSAEVMKIVNNLMKAPELAATMQEFSKEMTK--VIRYFC 70
           ATA TVG+LSKS EVMK+VN+LMKAPE+A TMQ FSKEMTK  VI  F 
Sbjct: 69  ATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFV 117



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,112,990
Number of extensions: 25463
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)