BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0236800 Os07g0236800|AK071087
(225 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G06530.1 | chr2:2588740-2590285 REVERSE LENGTH=226 296 8e-81
AT1G03950.1 | chr1:1011388-1013212 REVERSE LENGTH=211 133 7e-32
AT5G44560.1 | chr5:17946081-17948222 FORWARD LENGTH=223 125 2e-29
AT5G22950.1 | chr5:7681380-7682720 FORWARD LENGTH=230 60 1e-09
AT1G17730.1 | chr1:6099210-6100153 FORWARD LENGTH=204 48 5e-06
>AT2G06530.1 | chr2:2588740-2590285 REVERSE LENGTH=226
Length = 225
Score = 296 bits (757), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 157/225 (69%), Positives = 169/225 (75%), Gaps = 1/225 (0%)
Query: 1 MSFLFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVK 60
M+ +FGKRKTPAELLRENKRMLD+SIREIERERQGLQ QEKKLI EIKKTAK+GQMGAVK
Sbjct: 2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVK 61
Query: 61 VMAKDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLP 120
VMAKDLIRTRHQI KFY+LKSQLQGVSLR+QTLKSTQAMG+AMKGVTKAMGQMNRQ+NLP
Sbjct: 62 VMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLP 121
Query: 121 GLQRIMMEFERQNERMEMTSEVMGDAIXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQEL 180
LQ+IM EFERQNE+MEM SEVMGDAI LV+QVLDEIGIDINQEL
Sbjct: 122 SLQKIMQEFERQNEKMEMVSEVMGDAI-DDALEGDEEEEETEDLVSQVLDEIGIDINQEL 180
Query: 181 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQARLDNLRRM 225
V LQARLDNLR+M
Sbjct: 181 VNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225
>AT1G03950.1 | chr1:1011388-1013212 REVERSE LENGTH=211
Length = 210
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 4 LFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMA 63
+F K+ P E+LRE+KR + ++ R IE+E LQ++EKKL+ EIK+TAK G GA K++A
Sbjct: 3 IFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILA 62
Query: 64 KDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGLQ 123
+ LIR R QI ++Q++G++ Q + + ++ M+G TKAM M++ ++
Sbjct: 63 RQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQA 122
Query: 124 RIMMEFERQNERMEMTSEVMGDAIXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQEL 180
++M EF++Q+ +M+MT+E+M D+I L NQVLDEIGIDI +L
Sbjct: 123 KVMREFQKQSAQMDMTTEMMSDSI-DDALDNDEAEDETEDLTNQVLDEIGIDIASQL 178
>AT5G44560.1 | chr5:17946081-17948222 FORWARD LENGTH=223
Length = 222
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 4 LFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMA 63
+F K+ TP + LR +KR + + R IERE LQ +EK+L+ EIKKTAK G A K++A
Sbjct: 3 IFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILA 62
Query: 64 KDLIRTRHQITKFYQLKSQLQGVSLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGLQ 123
+ L+R R QIT ++Q++GV+ Q L ++ ++ MKG TKAM MN+Q+
Sbjct: 63 RQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQA 122
Query: 124 RIMMEFERQNERMEMTSEVMGDAIXXXXXXXXXXXXXXXXLVNQVLDEIGIDINQEL 180
+++ +F++Q+ +++MT E+M +AI L NQVLDEIG+ + +L
Sbjct: 123 KVIKDFQKQSAQLDMTIEMMSEAI-DETLDKDEAEEETEDLTNQVLDEIGVGVASQL 178
>AT5G22950.1 | chr5:7681380-7682720 FORWARD LENGTH=230
Length = 229
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 78/145 (53%), Gaps = 2/145 (1%)
Query: 4 LFGKRKTPAELLRENKRMLDRSIREIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMA 63
+ + P +LLR+ +R L + R IER+ + +Q +E+ + IK+ AK M + K +A
Sbjct: 7 IIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALA 66
Query: 64 KDLIRTRHQITKFYQLKSQLQGVSLRV-QTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGL 122
K+++ +R + + Y+ K+Q+ +S+ + +++ + +G K + M +N + P +
Sbjct: 67 KEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKS-AEVMKLVNNLMKAPQM 125
Query: 123 QRIMMEFERQNERMEMTSEVMGDAI 147
M EF ++ + + E + +AI
Sbjct: 126 AATMQEFSKEMTKAGVIEEFVNEAI 150
>AT1G17730.1 | chr1:6099210-6100153 FORWARD LENGTH=204
Length = 203
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
Query: 27 REIERERQGLQAQEKKLITEIKKTAKEGQMGAVKVMAKDLIRTRHQITKFYQLKSQLQGV 86
+ ++R+ + + +E+ ++KK ++G M ++ A++ IR R + + +L S+L V
Sbjct: 19 KSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIRKRSEQMNYLRLSSRLDAV 78
Query: 87 SLRVQTLKSTQAMGDAMKGVTKAMGQMNRQLNLPGLQRIMMEFERQNERMEMTSEVMGDA 146
R+ T + +M + K++ NL + M FE+Q ME+ +E M +A
Sbjct: 79 VARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMDNA 138
Query: 147 IXXXXXXXXXXXXXXXXLVNQVLDEIGIDIN 177
+ L+ QV D+ G++++
Sbjct: 139 M-AGSTSLSTPEGEVNSLMQQVADDYGLEVS 168
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,841,147
Number of extensions: 83446
Number of successful extensions: 502
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 6
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)