BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0476400 Os10g0476400|AK072826
(212 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03950.1 | chr1:1011388-1013212 REVERSE LENGTH=211 296 6e-81
AT5G44560.1 | chr5:17946081-17948222 FORWARD LENGTH=223 271 1e-73
AT2G06530.1 | chr2:2588740-2590285 REVERSE LENGTH=226 116 9e-27
AT5G22950.1 | chr5:7681380-7682720 FORWARD LENGTH=230 64 8e-11
>AT1G03950.1 | chr1:1011388-1013212 REVERSE LENGTH=211
Length = 210
Score = 296 bits (758), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 149/210 (70%), Positives = 172/210 (81%)
Query: 1 MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEXXXXX 60
MN F KKP PRE +R SKRE+T ATRGIE++IG+LQ EEK+LV EIKRTAK+GNE
Sbjct: 1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKI 60
Query: 61 XXXXXXXXXXXXSNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK 120
+NLQGSRAQ+RGIATHTQAMHA+TSVAAGMQ A+KAM A++K MDPAK
Sbjct: 61 LARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAK 120
Query: 121 QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS 180
Q KVM+EFQKQSAQMDMT EMMSDSID+ LD+D+AE+ETEDL NQVLDEIG+DIASQLSS
Sbjct: 121 QAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSS 180
Query: 181 APKGRITGKKVQADESSELDELEKRLAALK 210
APKG+I GKK + SS +DELEKRLAAL+
Sbjct: 181 APKGKIGGKKAEDVGSSGIDELEKRLAALR 210
>AT5G44560.1 | chr5:17946081-17948222 FORWARD LENGTH=223
Length = 222
Score = 271 bits (694), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/220 (62%), Positives = 168/220 (76%), Gaps = 10/220 (4%)
Query: 1 MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEXXXXX 60
MN F KK TP++A+R+SKRE+ ATRGIER+I +LQLEEKRLVAEIK+TAKTGNE
Sbjct: 1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKI 60
Query: 61 XXXXXXXXXXXXSNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK 120
+NLQGSRAQIRG+ THTQA++A+TS+++GM+ A+KAM A+NKQM P K
Sbjct: 61 LARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTK 120
Query: 121 QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS 180
Q KV+++FQKQSAQ+DMT EMMS++ID LD D+AEEETEDL NQVLDEIGV +ASQLSS
Sbjct: 121 QAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSS 180
Query: 181 APKGRITGKKVQA----------DESSELDELEKRLAALK 210
APKGRI K ESSE+DELEKRLA+L+
Sbjct: 181 APKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLR 220
>AT2G06530.1 | chr2:2588740-2590285 REVERSE LENGTH=226
Length = 225
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 112/183 (61%)
Query: 4 FAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEXXXXXXXX 63
F K+ TP E +R +KR L + R IER+ LQ +EK+L+ EIK+TAK G
Sbjct: 6 FGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAK 65
Query: 64 XXXXXXXXXSNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAKQMK 123
++Q++G++ Q + + ++ M+ +KAMG +N+QM+ K
Sbjct: 66 DLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQK 125
Query: 124 VMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSSAPK 183
+MQEF++Q+ +M+M +E+M D+ID+ L+ D+ EEETEDL +QVLDEIG+DI +L +AP
Sbjct: 126 IMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPS 185
Query: 184 GRI 186
G +
Sbjct: 186 GAV 188
>AT5G22950.1 | chr5:7681380-7682720 FORWARD LENGTH=230
Length = 229
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 14/225 (6%)
Query: 1 MNPFAKKPTPREAIRSSKRELTNATRGIERDIGTLQLEEKRLVAEIKRTAKTGNEXXXXX 60
MN KP P++ +R +R+L R IER I +Q EE+ + IK AK +
Sbjct: 5 MNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKA 64
Query: 61 XXXXXXXXXXXXSNLQGSRAQIRGIATHTQAMHANTSVAAGMQSASKAMGALNKQMDPAK 120
+ L ++AQ+ I+ H A + +++ M +N M +
Sbjct: 65 LAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQ 124
Query: 121 QMKVMQEFQKQSAQMDMTNEMMSDSIDNILDDDQAEEETEDLANQVLDEIGVDIASQLSS 180
MQEF K+ + + E ++++IDN LD + EEE ++ ++VL I + A++L
Sbjct: 125 MAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPV 184
Query: 181 AP-KGRI--------TGKKVQA-----DESSELDELEKRLAALKN 211
A K RI T ++ +A D+ EL+E+ RLA +++
Sbjct: 185 AVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.121 0.310
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,359,463
Number of extensions: 108634
Number of successful extensions: 635
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 6
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 109 (46.6 bits)