BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0703000 Os11g0703000|AK108011
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0703000 Thaumatin, pathogenesis-related family protein 281 2e-76
Os11g0703100 Thaumatin, pathogenesis-related family protein 162 1e-40
Os12g0568900 Thaumatin, pathogenesis-related family protein 149 1e-36
Os12g0569300 Thaumatin, pathogenesis-related family protein 139 2e-33
Os12g0569500 Thaumatin, pathogenesis-related family protein 139 2e-33
Os01g0839900 Thaumatin, pathogenesis-related family protein 77 1e-14
>Os11g0703000 Thaumatin, pathogenesis-related family protein
Length = 212
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/180 (81%), Positives = 146/180 (81%)
Query: 33 VWPLVTXXXXXXXXXXXXXXXTRLDGNGDGLATLAFPPGAWSGRVVARTGCRGNGSSRCD 92
VWPLVT TRLDGNGDGLATLAFPPGAWSGRVVARTGCRGNGSSRCD
Sbjct: 33 VWPLVTANAGLPAIADAAGAATRLDGNGDGLATLAFPPGAWSGRVVARTGCRGNGSSRCD 92
Query: 93 TGDAPPVTVAQVSVHGAGGLAEYSVSLVDGFNVAVVVTPHGFEQGRLCPSLGCAVDLXXX 152
TGDAPPVTVAQVSVHGAGGLAEYSVSLVDGFNVAVVVTPHGFEQGRLCPSLGCAVDL
Sbjct: 93 TGDAPPVTVAQVSVHGAGGLAEYSVSLVDGFNVAVVVTPHGFEQGRLCPSLGCAVDLAAD 152
Query: 153 XXXXXXXXXXXXXXXXEAFKARCPDTRTTPTDVEVTPQRCIQPAELKVVFCPPDNTSSTH 212
EAFKARCPDTRTTPTDVEVTPQRCIQPAELKVVFCPPDNTSSTH
Sbjct: 153 CPGDGGRGGCMAAGQAEAFKARCPDTRTTPTDVEVTPQRCIQPAELKVVFCPPDNTSSTH 212
>Os11g0703100 Thaumatin, pathogenesis-related family protein
Length = 206
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 106/173 (61%), Gaps = 7/173 (4%)
Query: 33 VWPLVTXXXXXXXXXXXXXXXTRLDGNGDGLATLAFPPGA-WSGRVVARTGCRGNGSSRC 91
VWPLVT RLD NG LA+LAFP A WSGRVV RTGC G++ C
Sbjct: 38 VWPLVTPNAGQPAIITGGAT-IRLDPNG--LASLAFPAAAGWSGRVVPRTGC--TGAATC 92
Query: 92 DTGDAPPVTVAQVSVHGAGGLAEYSVSLVDGFNVAVVVTPHGFEQGRLCPSLGCAVDLXX 151
TGDAPP TVAQVSV+ AGGLAEYSVSLVDGFNV +TPH F+ + CP LGCA D+
Sbjct: 93 ATGDAPPATVAQVSVNAAGGLAEYSVSLVDGFNVPATITPHAFDGSQTCPVLGCAADI-N 151
Query: 152 XXXXXXXXXXXXXXXXXEAFKARCPDTRTTPTDVEVTPQRCIQPAELKVVFCP 204
+ FK CP+ RTT TDVE TPQ+C P ELKVVFCP
Sbjct: 152 AACPADARVGAGCRASPQFFKEMCPEARTTATDVEATPQKCFGPGELKVVFCP 204
>Os12g0568900 Thaumatin, pathogenesis-related family protein
Length = 230
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 33 VWPLVTXXXXXXXXXXXXXXXTRLDGNGDGLATLAFPPGAWSGRVVARTGCRGNGS--SR 90
VWPLVT RLD N L +LAFPP WSGRV ARTGC S +
Sbjct: 39 VWPLVTPTSGQPISDNT----ARLDPNS--LISLAFPPTPWSGRVAARTGCDAAASPPAG 92
Query: 91 CDTGDAPPVTVAQVSVHGAGGLAEYSVSLVDGFNVAVVVTPHGFEQGRLCPSLGCAVDLX 150
C+TG +PP TVAQ+SVHG G +A YSVSLVDGFNV VVV+P G+ CP+LGC VDL
Sbjct: 93 CETGASPPSTVAQLSVHGGGDVATYSVSLVDGFNVPVVVSPQAVGGGQ-CPALGCVVDLN 151
Query: 151 -XXXXXXXXXXXXXXXXXXEAFKARCPDTRTTPTDVEVTPQRCIQPAELKVVFCPP 205
E FK RCP TRTTP DVE PQ C P ELKV+FCPP
Sbjct: 152 CDCPLGQRFSDGAACRGPPEYFKGRCPQTRTTPGDVEPVPQSCRSPGELKVIFCPP 207
>Os12g0569300 Thaumatin, pathogenesis-related family protein
Length = 233
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/187 (48%), Positives = 103/187 (55%), Gaps = 12/187 (6%)
Query: 33 VWPLVTXXXXXXXXXXXXXXXTRLDGNGDGLATLAFPPGAWSGRVVARTGCRGNGS-SRC 91
VWPLVT RLDG G GL + FP W+GRVVARTGC G G RC
Sbjct: 37 VWPLVTPNTGFPSISGNT---ARLDGGGRGLVSYDFPASFWAGRVVARTGCGGGGGLVRC 93
Query: 92 DTGDAPPVTVAQVSVH---GAGGLAEYSVSLVDGFNVAVVVTPHGFEQGRLCPSLGCAVD 148
+TG+APP TV Q+ VH GA LA YSVSLVDGFNV VV+P G CP+LGCA D
Sbjct: 94 ETGNAPPATVVQLVVHSPEGAQDLAAYSVSLVDGFNVPAVVSPQAIAGGGQCPALGCAAD 153
Query: 149 LXX-----XXXXXXXXXXXXXXXXXEAFKARCPDTRTTPTDVEVTPQRCIQPAELKVVFC 203
L + FKARCP TRTT +DVE PQ C+ P ELKVVFC
Sbjct: 154 LNAGCPRSQRVVGAGGAVVACRGTADYFKARCPLTRTTGSDVEPVPQHCLAPGELKVVFC 213
Query: 204 PPDNTSS 210
P ++
Sbjct: 214 QPSMVAA 220
>Os12g0569500 Thaumatin, pathogenesis-related family protein
Length = 233
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 99/178 (55%), Gaps = 14/178 (7%)
Query: 33 VWPLVTXXXXXXXXXXXXXXXTRLDGNGDGLATLAFPPGAWSGRVVARTGCRGNGSSRCD 92
VWP+V+ RL+G G GL +L P G WSGRVV RT CR G RCD
Sbjct: 43 VWPIVSPDSGSPPIADG----IRLEGRGVGLRSLNLPAGFWSGRVVPRTWCRDGG--RCD 96
Query: 93 TGDAPPVTVAQVSVHGAGGLAEYSVSLVDGFNVAVVVTPHGFEQGRLCPSLGCAVDLXXX 152
TG+APP TV ++S +GAGGLAEYSV+L +GFNV VV+PH G +CP+LGC DL
Sbjct: 97 TGNAPPATVVRLSFNGAGGLAEYSVNLGEGFNVPTVVSPHAIGGG-MCPALGCTADLNAG 155
Query: 153 XXXXXXXXXXXXXXXXEA-------FKARCPDTRTTPTDVEVTPQRCIQPAELKVVFC 203
A FK RCP TRT DVE PQ CI P E+K+VFC
Sbjct: 156 CAAGQRVYGGDTGGDVVACRGPASYFKQRCPLTRTGGGDVEPVPQHCISPGEIKLVFC 213
>Os01g0839900 Thaumatin, pathogenesis-related family protein
Length = 247
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 70/184 (38%), Gaps = 48/184 (26%)
Query: 65 TLAFPPGAWSGRVVARTGCRGNGSS-RCDTGD------------APPVTVAQVSVHGAGG 111
+ A P WSGR+ ARTGC G G+ C TGD A P T+AQVS+H
Sbjct: 66 SFAAPAHPWSGRIWARTGCTGAGAQLHCATGDCGGRLQCAGLGGAAPATLAQVSLHHGND 125
Query: 112 LAEYSVSLVDGFNVAVVVTPHGFEQGR-LCPSLGCAVDLXXX------------------ 152
Y VS+VDGFNV + VTPH +GR CP L C +L
Sbjct: 126 QTSYGVSVVDGFNVGLSVTPH---EGRGNCPVLACRKNLTETCPSELQLRTPAGSVVACK 182
Query: 153 -------------XXXXXXXXXXXXXXXXEAFKARCPDTRTTPTDVEVTPQRCIQPAELK 199
E FK CP T D C P ELK
Sbjct: 183 SGCEAFRTDELCCRNMYNSPRTCRSSKYSEFFKRECPQAFTYAHDSPSLTHECAAPRELK 242
Query: 200 VVFC 203
V+FC
Sbjct: 243 VIFC 246
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,535,022
Number of extensions: 262485
Number of successful extensions: 790
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 11
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)