Os12g0568900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thaumatin, pathogenesis-related family protein.
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Os12g0568900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thaumatin, pathogenesis-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.12 | 0.688 | 3.49 | -0.815 | 0.335 | 0.695 | -1.58 | 1.17 | -0.244 | 4.94 | 30.3 | 568 | -- | -- |
| 214.16 | 0.682 | 3.5 | -0.905 | 0.336 | 0.818 | -1.59 | -- | -0.243 | 4.97 | 30.36 | 557 | -- | -- |
| 220.12 | 0.691 | 3.48 | -0.781 | 0.362 | 0.735 | -- | 1.49 | -0.225 | 4.44 | 30.3 | 540 | -- | -- |
| 220.28 | 0.691 | 3.49 | -0.914 | 0.356 | 0.909 | -- | -- | -0.23 | 4.42 | 30.4 | 540 | -- | -- |
| 225.69 | 0.7 | 3.48 | -0.661 | -- | 0.411 | -- | 2.76 | -0.237 | -- | 30.6 | 594 | -- | -- |
| 226.73 | 0.706 | 3.52 | -0.789 | 0.101 | -- | -2.14 | -- | -0.31 | 5.4 | -- | -- | -- | -- |
| 236.39 | 0.72 | 3.52 | -0.798 | 0.183 | -- | -- | -- | -0.302 | 1.19 | -- | -- | -- | -- |
| 226.03 | 0.7 | 3.49 | -0.87 | -- | 0.756 | -- | -- | -0.227 | -- | 30.6 | 586 | -- | -- |
| 241.84 | 0.724 | 3.47 | -- | 0.307 | 0.808 | -- | -- | -0.129 | 4.44 | 30.64 | 557 | -- | -- |
| 238.46 | 0.722 | 3.51 | -0.791 | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
| 253.19 | 0.744 | 3.5 | -- | 0.169 | -- | -- | -- | -0.213 | 1.01 | -- | -- | -- | -- |
| 245.85 | 0.73 | 3.48 | -- | -- | 0.621 | -- | -- | -0.151 | -- | 30.9 | 580 | -- | -- |
| 254.98 | 0.745 | 3.49 | -- | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.44 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 2 | 208.58 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 208.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 4 | 208.84 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 6 | 209.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 9 | 209.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 14 | 210.05 | wind | 9 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 18 | 210.24 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 1 |
| 25 | 210.48 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 57 | 211.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 70 | 211.16 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 71 | 211.16 | temperature | 30 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 104 | 211.38 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 117 | 211.41 | atmosphere | 1005 | 43200 | < th | dose dependent | sin | 19 | NA |
| 128 | 211.43 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 185 | 211.53 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 24 | 19 |
| 187 | 211.54 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 257 | 211.62 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 321 | 211.68 | atmosphere | 1005 | 43200 | < th | dose dependent | no | NA | NA |
| 333 | 211.69 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 346 | 211.71 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 396 | 211.80 | wind | 9 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 475 | 211.97 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 624 | 212.29 | humidity | 80 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 627 | 212.30 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 634 | 212.35 | atmosphere | 1005 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 644 | 212.38 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 8 |
| 648 | 212.41 | wind | 1 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 655 | 212.43 | wind | 1 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 674 | 212.51 | wind | 1 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 733 | 212.78 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 16 |
| 737 | 212.80 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 739 | 212.83 | wind | 1 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 754 | 212.84 | wind | 3 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 762 | 212.92 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 781 | 212.94 | wind | 1 | 4320 | < th | dose dependent | rect. | 14 | 6 |
| 801 | 213.05 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 805 | 213.06 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 813 | 213.13 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 833 | 213.22 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 841 | 213.27 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 8 |
| 845 | 213.29 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 847 | 213.30 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 864 | 213.32 | temperature | 30 | 270 | < th | dose independent | rect. | 23 | 22 |
| 866 | 213.34 | temperature | 30 | 270 | < th | dose independent | sin | 10 | NA |
| 869 | 213.36 | temperature | 30 | 720 | > th | dose dependent | sin | 7 | NA |
| 872 | 213.38 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 877 | 213.40 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 8 |
| 885 | 213.44 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 890 | 213.46 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 20 |
| 895 | 213.54 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 936 | 213.67 | wind | 9 | 4320 | > th | dose dependent | rect. | 23 | 12 |
| 944 | 213.70 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 22 |
| 969 | 213.73 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 971 | 213.73 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 984 | 213.78 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 987 | 213.79 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 11 |